miRNA display CGI


Results 1 - 20 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29057 5' -52 NC_006146.1 + 137031 0.66 0.990909
Target:  5'- cCCGgGgaggAGGCCGGGuGGGGGCcuGggGu -3'
miRNA:   3'- -GGUgUa---UUCGGCUC-UUCCCGucCuuC- -5'
29057 5' -52 NC_006146.1 + 90061 0.66 0.990909
Target:  5'- gCugGaggGAGCCuAGGAGGcgguGCAGGggGg -3'
miRNA:   3'- gGugUa--UUCGGcUCUUCC----CGUCCuuC- -5'
29057 5' -52 NC_006146.1 + 170474 0.66 0.990909
Target:  5'- cCCGCGac--CCGAGggGcGaGCGGGggGc -3'
miRNA:   3'- -GGUGUauucGGCUCuuC-C-CGUCCuuC- -5'
29057 5' -52 NC_006146.1 + 167678 0.66 0.990909
Target:  5'- cCCGCGac--CCGAGggGcGaGCGGGggGc -3'
miRNA:   3'- -GGUGUauucGGCUCuuC-C-CGUCCuuC- -5'
29057 5' -52 NC_006146.1 + 98228 0.66 0.990909
Target:  5'- -gGCAUGgcguAGCCGGGGugcAGGGC-GGAc- -3'
miRNA:   3'- ggUGUAU----UCGGCUCU---UCCCGuCCUuc -5'
29057 5' -52 NC_006146.1 + 169543 0.66 0.990909
Target:  5'- cCCGCGac--CCGAGggGcGaGCGGGggGc -3'
miRNA:   3'- -GGUGUauucGGCUCuuC-C-CGUCCuuC- -5'
29057 5' -52 NC_006146.1 + 84085 0.66 0.990909
Target:  5'- cCCAC---GGgCGAGAauGGGGCGGGc-- -3'
miRNA:   3'- -GGUGuauUCgGCUCU--UCCCGUCCuuc -5'
29057 5' -52 NC_006146.1 + 103130 0.66 0.990909
Target:  5'- gUCACGUcccuGGCCGAGcuGGGGgAGGu-- -3'
miRNA:   3'- -GGUGUAu---UCGGCUCu-UCCCgUCCuuc -5'
29057 5' -52 NC_006146.1 + 168611 0.66 0.990909
Target:  5'- cCCGCGac--CCGAGggGcGaGCGGGggGc -3'
miRNA:   3'- -GGUGUauucGGCUCuuC-C-CGUCCuuC- -5'
29057 5' -52 NC_006146.1 + 165477 0.66 0.990787
Target:  5'- cCCAgaUGUGAGCCcuGAauccagcAGGGCAGGAc- -3'
miRNA:   3'- -GGU--GUAUUCGGcuCU-------UCCCGUCCUuc -5'
29057 5' -52 NC_006146.1 + 33631 0.66 0.989631
Target:  5'- aCCugGaAGGCaaCGGGGguGGGGgAGGGAGg -3'
miRNA:   3'- -GGugUaUUCG--GCUCU--UCCCgUCCUUC- -5'
29057 5' -52 NC_006146.1 + 33818 0.66 0.989631
Target:  5'- aCCugGaAGGCaaCGGGGguGGGGgAGGGAGg -3'
miRNA:   3'- -GGugUaUUCG--GCUCU--UCCCgUCCUUC- -5'
29057 5' -52 NC_006146.1 + 53528 0.66 0.989631
Target:  5'- gCGCGUGugaaGGCCGcgaggaccGAGGGGCuucuGGggGu -3'
miRNA:   3'- gGUGUAU----UCGGCu-------CUUCCCGu---CCuuC- -5'
29057 5' -52 NC_006146.1 + 154874 0.66 0.989631
Target:  5'- gUCAgGUaGAGCCcgucGggGGGCAGGGc- -3'
miRNA:   3'- -GGUgUA-UUCGGcu--CuuCCCGUCCUuc -5'
29057 5' -52 NC_006146.1 + 79138 0.66 0.989631
Target:  5'- gC-CAUGGGUCGGGGAGGaGCAGa--- -3'
miRNA:   3'- gGuGUAUUCGGCUCUUCC-CGUCcuuc -5'
29057 5' -52 NC_006146.1 + 101863 0.66 0.989631
Target:  5'- aCCACGgguggcGGGgCGAGGacGGuGGCGGGAAu -3'
miRNA:   3'- -GGUGUa-----UUCgGCUCU--UC-CCGUCCUUc -5'
29057 5' -52 NC_006146.1 + 129249 0.66 0.989631
Target:  5'- cCCAgGUGAGgCGcGAGGGuCAGGGAu -3'
miRNA:   3'- -GGUgUAUUCgGCuCUUCCcGUCCUUc -5'
29057 5' -52 NC_006146.1 + 53417 0.66 0.989496
Target:  5'- aCCGCGagucucucGGCCGAGAggauccgaaAGGGCGguggugucugcccGGGAGg -3'
miRNA:   3'- -GGUGUau------UCGGCUCU---------UCCCGU-------------CCUUC- -5'
29057 5' -52 NC_006146.1 + 126031 0.66 0.9888
Target:  5'- gCUGC-UGGGCCGGGAGggacugggcucccuuGGGUAGGGu- -3'
miRNA:   3'- -GGUGuAUUCGGCUCUU---------------CCCGUCCUuc -5'
29057 5' -52 NC_006146.1 + 73188 0.66 0.988218
Target:  5'- cCgGCAUAGGUCGAgcGAGGGGCuccuGGc-- -3'
miRNA:   3'- -GgUGUAUUCGGCU--CUUCCCGu---CCuuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.