miRNA display CGI


Results 1 - 20 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29057 5' -52 NC_006146.1 + 170474 0.66 0.990909
Target:  5'- cCCGCGac--CCGAGggGcGaGCGGGggGc -3'
miRNA:   3'- -GGUGUauucGGCUCuuC-C-CGUCCuuC- -5'
29057 5' -52 NC_006146.1 + 137218 0.66 0.986659
Target:  5'- cCCGgGgaggAAGCCGGGuGGGGGCcuGggGu -3'
miRNA:   3'- -GGUgUa---UUCGGCUC-UUCCCGucCuuC- -5'
29057 5' -52 NC_006146.1 + 14406 0.66 0.986659
Target:  5'- gCCGCGUAcGCCGuAGAguuuuacggGGGGCAcaGGGc- -3'
miRNA:   3'- -GGUGUAUuCGGC-UCU---------UCCCGU--CCUuc -5'
29057 5' -52 NC_006146.1 + 9892 0.66 0.986659
Target:  5'- cCCACAaAGGCgGuGAcggccaGGCAGGAGGc -3'
miRNA:   3'- -GGUGUaUUCGgCuCUuc----CCGUCCUUC- -5'
29057 5' -52 NC_006146.1 + 158401 0.66 0.986659
Target:  5'- -----gAGGCCGGGGAGcGGCuGGGAu -3'
miRNA:   3'- gguguaUUCGGCUCUUC-CCGuCCUUc -5'
29057 5' -52 NC_006146.1 + 155322 0.66 0.986659
Target:  5'- -----gAGGCCGGGGAGcGGCuGGGAu -3'
miRNA:   3'- gguguaUUCGGCUCUUC-CCGuCCUUc -5'
29057 5' -52 NC_006146.1 + 152244 0.66 0.986659
Target:  5'- -----gAGGCCGGGGAGcGGCuGGGAu -3'
miRNA:   3'- gguguaUUCGGCUCUUC-CCGuCCUUc -5'
29057 5' -52 NC_006146.1 + 149166 0.66 0.986659
Target:  5'- -----gAGGCCGGGGAGcGGCuGGGAu -3'
miRNA:   3'- gguguaUUCGGCUCUUC-CCGuCCUUc -5'
29057 5' -52 NC_006146.1 + 146088 0.66 0.986659
Target:  5'- -----gAGGCCGGGGAGcGGCuGGGAu -3'
miRNA:   3'- gguguaUUCGGCUCUUC-CCGuCCUUc -5'
29057 5' -52 NC_006146.1 + 39883 0.66 0.988068
Target:  5'- -----gAGGCUGAGGcugagcggccugcGGGGCGGGAAa -3'
miRNA:   3'- gguguaUUCGGCUCU-------------UCCCGUCCUUc -5'
29057 5' -52 NC_006146.1 + 71633 0.66 0.988218
Target:  5'- gCCACGUcuGCgugCGGGAAGGcgGCgaGGGAAGg -3'
miRNA:   3'- -GGUGUAuuCG---GCUCUUCC--CG--UCCUUC- -5'
29057 5' -52 NC_006146.1 + 71788 0.66 0.988218
Target:  5'- aCGCcugAGGCCGG--AGGGCAGGc-- -3'
miRNA:   3'- gGUGua-UUCGGCUcuUCCCGUCCuuc -5'
29057 5' -52 NC_006146.1 + 103130 0.66 0.990909
Target:  5'- gUCACGUcccuGGCCGAGcuGGGGgAGGu-- -3'
miRNA:   3'- -GGUGUAu---UCGGCUCu-UCCCgUCCuuc -5'
29057 5' -52 NC_006146.1 + 84085 0.66 0.990909
Target:  5'- cCCAC---GGgCGAGAauGGGGCGGGc-- -3'
miRNA:   3'- -GGUGuauUCgGCUCU--UCCCGUCCuuc -5'
29057 5' -52 NC_006146.1 + 165477 0.66 0.990787
Target:  5'- cCCAgaUGUGAGCCcuGAauccagcAGGGCAGGAc- -3'
miRNA:   3'- -GGU--GUAUUCGGcuCU-------UCCCGUCCUuc -5'
29057 5' -52 NC_006146.1 + 129249 0.66 0.989631
Target:  5'- cCCAgGUGAGgCGcGAGGGuCAGGGAu -3'
miRNA:   3'- -GGUgUAUUCgGCuCUUCCcGUCCUUc -5'
29057 5' -52 NC_006146.1 + 101863 0.66 0.989631
Target:  5'- aCCACGgguggcGGGgCGAGGacGGuGGCGGGAAu -3'
miRNA:   3'- -GGUGUa-----UUCgGCUCU--UC-CCGUCCUUc -5'
29057 5' -52 NC_006146.1 + 79138 0.66 0.989631
Target:  5'- gC-CAUGGGUCGGGGAGGaGCAGa--- -3'
miRNA:   3'- gGuGUAUUCGGCUCUUCC-CGUCcuuc -5'
29057 5' -52 NC_006146.1 + 73188 0.66 0.988218
Target:  5'- cCgGCAUAGGUCGAgcGAGGGGCuccuGGc-- -3'
miRNA:   3'- -GgUGUAUUCGGCU--CUUCCCGu---CCuuc -5'
29057 5' -52 NC_006146.1 + 123026 0.66 0.988218
Target:  5'- -gACcgAGGCCGAGGcggcccagguccGGGcGCuGGAGGa -3'
miRNA:   3'- ggUGuaUUCGGCUCU------------UCC-CGuCCUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.