miRNA display CGI


Results 1 - 20 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29057 5' -52 NC_006146.1 + 95443 1.13 0.004613
Target:  5'- aCCACAUAAGCCGAGAAGGGCAGGAAGg -3'
miRNA:   3'- -GGUGUAUUCGGCUCUUCCCGUCCUUC- -5'
29057 5' -52 NC_006146.1 + 149106 0.8 0.410596
Target:  5'- aCACAUGGGCuCGuGGGAGaGGCGGGGAGg -3'
miRNA:   3'- gGUGUAUUCG-GC-UCUUC-CCGUCCUUC- -5'
29057 5' -52 NC_006146.1 + 152184 0.8 0.410596
Target:  5'- aCACAUGGGCuCGuGGGAGaGGCGGGGAGg -3'
miRNA:   3'- gGUGUAUUCG-GC-UCUUC-CCGUCCUUC- -5'
29057 5' -52 NC_006146.1 + 158341 0.8 0.410596
Target:  5'- aCACAUGGGCuCGuGGGAGaGGCGGGGAGg -3'
miRNA:   3'- gGUGUAUUCG-GC-UCUUC-CCGUCCUUC- -5'
29057 5' -52 NC_006146.1 + 146028 0.8 0.410596
Target:  5'- aCACAUGGGCuCGuGGGAGaGGCGGGGAGg -3'
miRNA:   3'- gGUGUAUUCG-GC-UCUUC-CCGUCCUUC- -5'
29057 5' -52 NC_006146.1 + 142950 0.8 0.410596
Target:  5'- aCACAUGGGCuCGuGGGAGaGGCGGGGAGg -3'
miRNA:   3'- gGUGUAUUCG-GC-UCUUC-CCGUCCUUC- -5'
29057 5' -52 NC_006146.1 + 155262 0.8 0.410596
Target:  5'- aCACAUGGGCuCGuGGGAGaGGCGGGGAGg -3'
miRNA:   3'- gGUGUAUUCG-GC-UCUUC-CCGUCCUUC- -5'
29057 5' -52 NC_006146.1 + 141427 0.79 0.465686
Target:  5'- gCCugGgguGGCCGGGGAGGGguGGGGa -3'
miRNA:   3'- -GGugUau-UCGGCUCUUCCCguCCUUc -5'
29057 5' -52 NC_006146.1 + 147583 0.79 0.465686
Target:  5'- gCCugGgguGGCCGGGGAGGGguGGGGa -3'
miRNA:   3'- -GGugUau-UCGGCUCUUCCCguCCUUc -5'
29057 5' -52 NC_006146.1 + 147454 0.79 0.465686
Target:  5'- gCCuCGUAGGCCGAGAcGGGCAGccGGAGc -3'
miRNA:   3'- -GGuGUAUUCGGCUCUuCCCGUC--CUUC- -5'
29057 5' -52 NC_006146.1 + 153738 0.79 0.465686
Target:  5'- gCCugGgguGGCCGGGGAGGGguGGGGa -3'
miRNA:   3'- -GGugUau-UCGGCUCUUCCCguCCUUc -5'
29057 5' -52 NC_006146.1 + 150661 0.79 0.465686
Target:  5'- gCCugGgguGGCCGGGGAGGGguGGGGa -3'
miRNA:   3'- -GGugUau-UCGGCUCUUCCCguCCUUc -5'
29057 5' -52 NC_006146.1 + 156816 0.79 0.465686
Target:  5'- gCCugGgguGGCCGGGGAGGGguGGGGa -3'
miRNA:   3'- -GGugUau-UCGGCUCUUCCCguCCUUc -5'
29057 5' -52 NC_006146.1 + 144505 0.79 0.465686
Target:  5'- gCCugGgguGGCCGGGGAGGGguGGGGa -3'
miRNA:   3'- -GGugUau-UCGGCUCUUCCCguCCUUc -5'
29057 5' -52 NC_006146.1 + 14852 0.79 0.504463
Target:  5'- gCCGCGggAGGCCGAGggGGcagcCAGGGAGc -3'
miRNA:   3'- -GGUGUa-UUCGGCUCuuCCc---GUCCUUC- -5'
29057 5' -52 NC_006146.1 + 100049 0.78 0.514377
Target:  5'- aCCACcUGcGCCGGGAagaGGGGCuGGAAGa -3'
miRNA:   3'- -GGUGuAUuCGGCUCU---UCCCGuCCUUC- -5'
29057 5' -52 NC_006146.1 + 145993 0.78 0.541522
Target:  5'- aCACA-AAGCUGAuuaucuggcccaccGAGGGGCAGGggGg -3'
miRNA:   3'- gGUGUaUUCGGCU--------------CUUCCCGUCCuuC- -5'
29057 5' -52 NC_006146.1 + 141717 0.76 0.637732
Target:  5'- gCugAgggGGGCCGGGGAGggaGGCGGGGAGg -3'
miRNA:   3'- gGugUa--UUCGGCUCUUC---CCGUCCUUC- -5'
29057 5' -52 NC_006146.1 + 157102 0.76 0.637732
Target:  5'- -gACA--AGCUGAGggGGGCcGGGGAGg -3'
miRNA:   3'- ggUGUauUCGGCUCuuCCCG-UCCUUC- -5'
29057 5' -52 NC_006146.1 + 144790 0.76 0.637732
Target:  5'- -gACA--AGCUGAGggGGGCcGGGGAGg -3'
miRNA:   3'- ggUGUauUCGGCUCuuCCCG-UCCUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.