Results 21 - 40 of 212 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29057 | 5' | -52 | NC_006146.1 | + | 123026 | 0.66 | 0.988218 |
Target: 5'- -gACcgAGGCCGAGGcggcccagguccGGGcGCuGGAGGa -3' miRNA: 3'- ggUGuaUUCGGCUCU------------UCC-CGuCCUUC- -5' |
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29057 | 5' | -52 | NC_006146.1 | + | 71633 | 0.66 | 0.988218 |
Target: 5'- gCCACGUcuGCgugCGGGAAGGcgGCgaGGGAAGg -3' miRNA: 3'- -GGUGUAuuCG---GCUCUUCC--CG--UCCUUC- -5' |
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29057 | 5' | -52 | NC_006146.1 | + | 151621 | 0.66 | 0.988218 |
Target: 5'- cCCGCucca-CCGAGAcccGGCAGGggGu -3' miRNA: 3'- -GGUGuauucGGCUCUuc-CCGUCCuuC- -5' |
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29057 | 5' | -52 | NC_006146.1 | + | 73188 | 0.66 | 0.988218 |
Target: 5'- cCgGCAUAGGUCGAgcGAGGGGCuccuGGc-- -3' miRNA: 3'- -GgUGUAUUCGGCU--CUUCCCGu---CCuuc -5' |
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29057 | 5' | -52 | NC_006146.1 | + | 71788 | 0.66 | 0.988218 |
Target: 5'- aCGCcugAGGCCGG--AGGGCAGGc-- -3' miRNA: 3'- gGUGua-UUCGGCUcuUCCCGUCCuuc -5' |
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29057 | 5' | -52 | NC_006146.1 | + | 39883 | 0.66 | 0.988068 |
Target: 5'- -----gAGGCUGAGGcugagcggccugcGGGGCGGGAAa -3' miRNA: 3'- gguguaUUCGGCUCU-------------UCCCGUCCUUc -5' |
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29057 | 5' | -52 | NC_006146.1 | + | 68251 | 0.66 | 0.986659 |
Target: 5'- uCCACGaGAGaucCCGccacgcgguGGAGGGGCGGGGc- -3' miRNA: 3'- -GGUGUaUUC---GGC---------UCUUCCCGUCCUuc -5' |
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29057 | 5' | -52 | NC_006146.1 | + | 155322 | 0.66 | 0.986659 |
Target: 5'- -----gAGGCCGGGGAGcGGCuGGGAu -3' miRNA: 3'- gguguaUUCGGCUCUUC-CCGuCCUUc -5' |
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29057 | 5' | -52 | NC_006146.1 | + | 4661 | 0.66 | 0.986659 |
Target: 5'- cCCGCcguccUGGGCCGGGu-GGGCGaggcGGggGc -3' miRNA: 3'- -GGUGu----AUUCGGCUCuuCCCGU----CCuuC- -5' |
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29057 | 5' | -52 | NC_006146.1 | + | 152244 | 0.66 | 0.986659 |
Target: 5'- -----gAGGCCGGGGAGcGGCuGGGAu -3' miRNA: 3'- gguguaUUCGGCUCUUC-CCGuCCUUc -5' |
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29057 | 5' | -52 | NC_006146.1 | + | 143010 | 0.66 | 0.986659 |
Target: 5'- -----gAGGCCGGGGAGcGGCuGGGAu -3' miRNA: 3'- gguguaUUCGGCUCUUC-CCGuCCUUc -5' |
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29057 | 5' | -52 | NC_006146.1 | + | 149166 | 0.66 | 0.986659 |
Target: 5'- -----gAGGCCGGGGAGcGGCuGGGAu -3' miRNA: 3'- gguguaUUCGGCUCUUC-CCGuCCUUc -5' |
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29057 | 5' | -52 | NC_006146.1 | + | 39847 | 0.66 | 0.986659 |
Target: 5'- uCCGCGUuGGCgGGGA--GGUAGGAGu -3' miRNA: 3'- -GGUGUAuUCGgCUCUucCCGUCCUUc -5' |
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29057 | 5' | -52 | NC_006146.1 | + | 94401 | 0.66 | 0.986659 |
Target: 5'- gCCAgGUGugGGCCGuGAGGcuuGGCAGGccGa -3' miRNA: 3'- -GGUgUAU--UCGGCuCUUC---CCGUCCuuC- -5' |
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29057 | 5' | -52 | NC_006146.1 | + | 146088 | 0.66 | 0.986659 |
Target: 5'- -----gAGGCCGGGGAGcGGCuGGGAu -3' miRNA: 3'- gguguaUUCGGCUCUUC-CCGuCCUUc -5' |
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29057 | 5' | -52 | NC_006146.1 | + | 9892 | 0.66 | 0.986659 |
Target: 5'- cCCACAaAGGCgGuGAcggccaGGCAGGAGGc -3' miRNA: 3'- -GGUGUaUUCGgCuCUuc----CCGUCCUUC- -5' |
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29057 | 5' | -52 | NC_006146.1 | + | 128093 | 0.66 | 0.986659 |
Target: 5'- -uGCGggagGGGCCGAGGcAGGGgacaauggcgucCAGGAGGc -3' miRNA: 3'- ggUGUa---UUCGGCUCU-UCCC------------GUCCUUC- -5' |
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29057 | 5' | -52 | NC_006146.1 | + | 14406 | 0.66 | 0.986659 |
Target: 5'- gCCGCGUAcGCCGuAGAguuuuacggGGGGCAcaGGGc- -3' miRNA: 3'- -GGUGUAUuCGGC-UCU---------UCCCGU--CCUuc -5' |
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29057 | 5' | -52 | NC_006146.1 | + | 137218 | 0.66 | 0.986659 |
Target: 5'- cCCGgGgaggAAGCCGGGuGGGGGCcuGggGu -3' miRNA: 3'- -GGUgUa---UUCGGCUC-UUCCCGucCuuC- -5' |
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29057 | 5' | -52 | NC_006146.1 | + | 158401 | 0.66 | 0.986659 |
Target: 5'- -----gAGGCCGGGGAGcGGCuGGGAu -3' miRNA: 3'- gguguaUUCGGCUCUUC-CCGuCCUUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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