miRNA display CGI


Results 1 - 20 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29057 5' -52 NC_006146.1 + 562 0.74 0.75027
Target:  5'- uCCACAcguGGCCucccagGAGAGGGGCcGGggGc -3'
miRNA:   3'- -GGUGUau-UCGG------CUCUUCCCGuCCuuC- -5'
29057 5' -52 NC_006146.1 + 1493 0.74 0.75027
Target:  5'- uCCACAcguGGCCucccagGAGAGGGGCcGGggGc -3'
miRNA:   3'- -GGUGUau-UCGG------CUCUUCCCGuCCuuC- -5'
29057 5' -52 NC_006146.1 + 2425 0.74 0.75027
Target:  5'- uCCACAcguGGCCucccagGAGAGGGGCcGGggGc -3'
miRNA:   3'- -GGUGUau-UCGG------CUCUUCCCGuCCuuC- -5'
29057 5' -52 NC_006146.1 + 2476 0.67 0.973775
Target:  5'- -gGCGguguGGCCGGcGGGGGCAGGcAGc -3'
miRNA:   3'- ggUGUau--UCGGCUcUUCCCGUCCuUC- -5'
29057 5' -52 NC_006146.1 + 3357 0.74 0.75027
Target:  5'- uCCACAcguGGCCucccagGAGAGGGGCcGGggGc -3'
miRNA:   3'- -GGUGUau-UCGG------CUCUUCCCGuCCuuC- -5'
29057 5' -52 NC_006146.1 + 3769 0.71 0.865524
Target:  5'- cCCACuuucUAcGCgGGGggGGGgGGGggGg -3'
miRNA:   3'- -GGUGu---AUuCGgCUCuuCCCgUCCuuC- -5'
29057 5' -52 NC_006146.1 + 4661 0.66 0.986659
Target:  5'- cCCGCcguccUGGGCCGGGu-GGGCGaggcGGggGc -3'
miRNA:   3'- -GGUGu----AUUCGGCUCuuCCCGU----CCuuC- -5'
29057 5' -52 NC_006146.1 + 9892 0.66 0.986659
Target:  5'- cCCACAaAGGCgGuGAcggccaGGCAGGAGGc -3'
miRNA:   3'- -GGUGUaUUCGgCuCUuc----CCGUCCUUC- -5'
29057 5' -52 NC_006146.1 + 11799 0.7 0.930383
Target:  5'- aCACAgGGGCUGGGGAcccuGCAGGAGGg -3'
miRNA:   3'- gGUGUaUUCGGCUCUUcc--CGUCCUUC- -5'
29057 5' -52 NC_006146.1 + 12859 0.67 0.981024
Target:  5'- gCCugGggcgAGGCUGGGuggcuGGGCAGGccGg -3'
miRNA:   3'- -GGugUa---UUCGGCUCuu---CCCGUCCuuC- -5'
29057 5' -52 NC_006146.1 + 13310 0.68 0.9647
Target:  5'- cCCACGU--GCUGGGcaccAGGGCGGuGGAGu -3'
miRNA:   3'- -GGUGUAuuCGGCUCu---UCCCGUC-CUUC- -5'
29057 5' -52 NC_006146.1 + 13517 0.69 0.953624
Target:  5'- gCUACuuuAUGGGCCGAGgcGuGGaCAGGAAc -3'
miRNA:   3'- -GGUG---UAUUCGGCUCuuC-CC-GUCCUUc -5'
29057 5' -52 NC_006146.1 + 14012 0.68 0.961238
Target:  5'- gCugGUGcuGGaaGGcGGAGGGCAGGGAGc -3'
miRNA:   3'- gGugUAU--UCggCU-CUUCCCGUCCUUC- -5'
29057 5' -52 NC_006146.1 + 14406 0.66 0.986659
Target:  5'- gCCGCGUAcGCCGuAGAguuuuacggGGGGCAcaGGGc- -3'
miRNA:   3'- -GGUGUAUuCGGC-UCU---------UCCCGU--CCUuc -5'
29057 5' -52 NC_006146.1 + 14852 0.79 0.504463
Target:  5'- gCCGCGggAGGCCGAGggGGcagcCAGGGAGc -3'
miRNA:   3'- -GGUGUa-UUCGGCUCuuCCc---GUCCUUC- -5'
29057 5' -52 NC_006146.1 + 15279 0.68 0.96794
Target:  5'- -uGCAgcGGCUGAaccggagcGAGGGGgAGGAGGg -3'
miRNA:   3'- ggUGUauUCGGCU--------CUUCCCgUCCUUC- -5'
29057 5' -52 NC_006146.1 + 15938 0.68 0.970962
Target:  5'- gCCugGgcgAGGCUGGGuggcuGGGCAGGccGg -3'
miRNA:   3'- -GGugUa--UUCGGCUCuu---CCCGUCCuuC- -5'
29057 5' -52 NC_006146.1 + 19015 0.68 0.970962
Target:  5'- gCCugGgcgAGGCUGGGuggcuGGGCAGGccGg -3'
miRNA:   3'- -GGugUa--UUCGGCUCuu---CCCGUCCuuC- -5'
29057 5' -52 NC_006146.1 + 19996 0.7 0.91347
Target:  5'- cCCACGac-GCCGGGAAGGGCuuccuccGGGc- -3'
miRNA:   3'- -GGUGUauuCGGCUCUUCCCGu------CCUuc -5'
29057 5' -52 NC_006146.1 + 21906 0.7 0.924994
Target:  5'- cCCGCcgAGGa--GGAGGGGCGGGGAa -3'
miRNA:   3'- -GGUGuaUUCggcUCUUCCCGUCCUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.