miRNA display CGI


Results 1 - 20 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29057 5' -52 NC_006146.1 + 95443 1.13 0.004613
Target:  5'- aCCACAUAAGCCGAGAAGGGCAGGAAGg -3'
miRNA:   3'- -GGUGUAUUCGGCUCUUCCCGUCCUUC- -5'
29057 5' -52 NC_006146.1 + 168213 0.7 0.91347
Target:  5'- gCGCGUGgggauGGCCGgcgGGAGGGGCcggcgccugcAGGggGg -3'
miRNA:   3'- gGUGUAU-----UCGGC---UCUUCCCG----------UCCuuC- -5'
29057 5' -52 NC_006146.1 + 87345 0.7 0.919356
Target:  5'- -aACAUGAGCCGGGAcauGGGaCuGGAu- -3'
miRNA:   3'- ggUGUAUUCGGCUCUu--CCC-GuCCUuc -5'
29057 5' -52 NC_006146.1 + 170474 0.66 0.990909
Target:  5'- cCCGCGac--CCGAGggGcGaGCGGGggGc -3'
miRNA:   3'- -GGUGUauucGGCUCuuC-C-CGUCCuuC- -5'
29057 5' -52 NC_006146.1 + 49834 0.75 0.699962
Target:  5'- gCACGUGuGCCGcAGgcGGGuCAGGAGGu -3'
miRNA:   3'- gGUGUAUuCGGC-UCuuCCC-GUCCUUC- -5'
29057 5' -52 NC_006146.1 + 149516 0.74 0.740385
Target:  5'- uCCGCAUAGGCCucguuGAGGaugucgaugaccGGCAGGAAGc -3'
miRNA:   3'- -GGUGUAUUCGGcu---CUUC------------CCGUCCUUC- -5'
29057 5' -52 NC_006146.1 + 159780 0.73 0.788629
Target:  5'- cCCAgGUAGGCCGA--GGGGUcgagcccaucgGGGAAGa -3'
miRNA:   3'- -GGUgUAUUCGGCUcuUCCCG-----------UCCUUC- -5'
29057 5' -52 NC_006146.1 + 99513 0.73 0.797877
Target:  5'- -gGCAgaaaggggAAGCCGGGAacguAGGGCuGGAAGu -3'
miRNA:   3'- ggUGUa-------UUCGGCUCU----UCCCGuCCUUC- -5'
29057 5' -52 NC_006146.1 + 96444 0.72 0.833219
Target:  5'- gCCAuCGUGGGCCau-GGGGGCAGGGAc -3'
miRNA:   3'- -GGU-GUAUUCGGcucUUCCCGUCCUUc -5'
29057 5' -52 NC_006146.1 + 167281 0.7 0.91347
Target:  5'- gCGCGUGgggauGGCCGgcgGGAGGGGCcggcgccugcAGGggGg -3'
miRNA:   3'- gGUGUAU-----UCGGC---UCUUCCCG----------UCCuuC- -5'
29057 5' -52 NC_006146.1 + 85562 0.71 0.865524
Target:  5'- aCACGgucggGGGCaCGuGggGuGGCAGGAGGc -3'
miRNA:   3'- gGUGUa----UUCG-GCuCuuC-CCGUCCUUC- -5'
29057 5' -52 NC_006146.1 + 94799 0.73 0.806968
Target:  5'- uCCACGUAGGCCaGGcccGGGGGUugcccaccAGGAAGg -3'
miRNA:   3'- -GGUGUAUUCGGcUC---UUCCCG--------UCCUUC- -5'
29057 5' -52 NC_006146.1 + 147454 0.79 0.465686
Target:  5'- gCCuCGUAGGCCGAGAcGGGCAGccGGAGc -3'
miRNA:   3'- -GGuGUAUUCGGCUCUuCCCGUC--CUUC- -5'
29057 5' -52 NC_006146.1 + 117191 0.71 0.865524
Target:  5'- aCCACAUGuGCCaGAGAGGuGGCAGu--- -3'
miRNA:   3'- -GGUGUAUuCGG-CUCUUC-CCGUCcuuc -5'
29057 5' -52 NC_006146.1 + 100049 0.78 0.514377
Target:  5'- aCCACcUGcGCCGGGAagaGGGGCuGGAAGa -3'
miRNA:   3'- -GGUGuAUuCGGCUCU---UCCCGuCCUUC- -5'
29057 5' -52 NC_006146.1 + 47151 0.73 0.806066
Target:  5'- gCGCAcGAGCCugucccuGAGGAGGGCauacuGGGGAGa -3'
miRNA:   3'- gGUGUaUUCGG-------CUCUUCCCG-----UCCUUC- -5'
29057 5' -52 NC_006146.1 + 170077 0.7 0.907338
Target:  5'- gCGCGUGgggauGGCCGgcgGGAGGGGCcggcgccgcAGGggGg -3'
miRNA:   3'- gGUGUAU-----UCGGC---UCUUCCCG---------UCCuuC- -5'
29057 5' -52 NC_006146.1 + 169145 0.7 0.91347
Target:  5'- gCGCGUGgggauGGCCGgcgGGAGGGGCcggcgccugcAGGggGg -3'
miRNA:   3'- gGUGUAU-----UCGGC---UCUUCCCG----------UCCuuC- -5'
29057 5' -52 NC_006146.1 + 145993 0.78 0.541522
Target:  5'- aCACA-AAGCUGAuuaucuggcccaccGAGGGGCAGGggGg -3'
miRNA:   3'- gGUGUaUUCGGCU--------------CUUCCCGUCCuuC- -5'
29057 5' -52 NC_006146.1 + 53036 0.74 0.768744
Target:  5'- gCCGCGgccgccGCCGAGAgguaaggGGGGCGGGuGGg -3'
miRNA:   3'- -GGUGUauu---CGGCUCU-------UCCCGUCCuUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.