miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29058 3' -50.3 NC_006146.1 + 43632 0.66 0.997197
Target:  5'- aGUGggCGGCG-GGGCGUGGccgccugGgGAGAGg -3'
miRNA:   3'- -UACaaGUCGUaCUUGCACC-------UgCUCUC- -5'
29058 3' -50.3 NC_006146.1 + 155803 0.66 0.996739
Target:  5'- aGUGUgu-GCcUGggUGUGGugGAGuGg -3'
miRNA:   3'- -UACAaguCGuACuuGCACCugCUCuC- -5'
29058 3' -50.3 NC_006146.1 + 152725 0.66 0.996739
Target:  5'- aGUGUgu-GCcUGggUGUGGugGAGuGg -3'
miRNA:   3'- -UACAaguCGuACuuGCACCugCUCuC- -5'
29058 3' -50.3 NC_006146.1 + 149648 0.66 0.996739
Target:  5'- aGUGUgu-GCcUGggUGUGGugGAGuGg -3'
miRNA:   3'- -UACAaguCGuACuuGCACCugCUCuC- -5'
29058 3' -50.3 NC_006146.1 + 146570 0.66 0.996739
Target:  5'- aGUGUgu-GCcUGggUGUGGugGAGuGg -3'
miRNA:   3'- -UACAaguCGuACuuGCACCugCUCuC- -5'
29058 3' -50.3 NC_006146.1 + 143492 0.66 0.996739
Target:  5'- aGUGUgu-GCcUGggUGUGGugGAGuGg -3'
miRNA:   3'- -UACAaguCGuACuuGCACCugCUCuC- -5'
29058 3' -50.3 NC_006146.1 + 12394 0.67 0.990673
Target:  5'- gAUGUUCAGggaCGUGGACGcggcggUGGACGccGAGg -3'
miRNA:   3'- -UACAAGUC---GUACUUGC------ACCUGCu-CUC- -5'
29058 3' -50.3 NC_006146.1 + 95008 0.68 0.986237
Target:  5'- ----aCGGCGgucaGGAUGUGGACgGAGAGg -3'
miRNA:   3'- uacaaGUCGUa---CUUGCACCUG-CUCUC- -5'
29058 3' -50.3 NC_006146.1 + 143173 0.68 0.984445
Target:  5'- cUGUagAGUAUGggUGUGGuuuuagugcacGCGGGAGu -3'
miRNA:   3'- uACAagUCGUACuuGCACC-----------UGCUCUC- -5'
29058 3' -50.3 NC_006146.1 + 103595 0.69 0.97273
Target:  5'- ---cUCAGCGcGGACGUGGccCGGGAGc -3'
miRNA:   3'- uacaAGUCGUaCUUGCACCu-GCUCUC- -5'
29058 3' -50.3 NC_006146.1 + 68816 0.69 0.97273
Target:  5'- cGUGagCGGCAUcGAGa-UGGACGAGAGc -3'
miRNA:   3'- -UACaaGUCGUA-CUUgcACCUGCUCUC- -5'
29058 3' -50.3 NC_006146.1 + 58216 0.71 0.927129
Target:  5'- uUGUUCAGUAgcgcacaccggGGGCGUGGACaAGGGc -3'
miRNA:   3'- uACAAGUCGUa----------CUUGCACCUGcUCUC- -5'
29058 3' -50.3 NC_006146.1 + 95595 1.06 0.014977
Target:  5'- cAUGUUCAGCAUGAACGUGGACGAGAGc -3'
miRNA:   3'- -UACAAGUCGUACUUGCACCUGCUCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.