miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29058 5' -62.3 NC_006146.1 + 47885 0.67 0.591505
Target:  5'- cCGC-CUCGGC--CUCGGUCAgcgCUCCGa -3'
miRNA:   3'- -GCGaGAGCCGagGAGCCGGUa--GGGGC- -5'
29058 5' -62.3 NC_006146.1 + 101990 0.67 0.588618
Target:  5'- gGCUCU-GGCUCCcuugcuaggggcucUgGGCUGUCuCCCGg -3'
miRNA:   3'- gCGAGAgCCGAGG--------------AgCCGGUAG-GGGC- -5'
29058 5' -62.3 NC_006146.1 + 158162 0.68 0.580933
Target:  5'- gGCUCagcgugcaccaccUUGGcCUCCUUGGCCGUcaggaCCCCc -3'
miRNA:   3'- gCGAG-------------AGCC-GAGGAGCCGGUA-----GGGGc -5'
29058 5' -62.3 NC_006146.1 + 126877 0.68 0.553269
Target:  5'- aGCgg--GGC-CCUCGGCCGcccccUCCCCGc -3'
miRNA:   3'- gCGagagCCGaGGAGCCGGU-----AGGGGC- -5'
29058 5' -62.3 NC_006146.1 + 48761 0.68 0.543817
Target:  5'- uGUUCUCuauGGUggUCUUGGCCGUCUCCa -3'
miRNA:   3'- gCGAGAG---CCGa-GGAGCCGGUAGGGGc -5'
29058 5' -62.3 NC_006146.1 + 26015 0.68 0.531611
Target:  5'- cCGCUUUCGGCcUCUcggguccaccaggcCGGCCGgagggaCCCCGg -3'
miRNA:   3'- -GCGAGAGCCGaGGA--------------GCCGGUa-----GGGGC- -5'
29058 5' -62.3 NC_006146.1 + 29093 0.68 0.531611
Target:  5'- cCGCUUUCGGCcUCUcggguccaccaggcCGGCCGgagggaCCCCGg -3'
miRNA:   3'- -GCGAGAGCCGaGGA--------------GCCGGUa-----GGGGC- -5'
29058 5' -62.3 NC_006146.1 + 19860 0.68 0.531611
Target:  5'- cCGCUUUCGGCcUCUcggguccaccaggcCGGCCGgagggaCCCCGg -3'
miRNA:   3'- -GCGAGAGCCGaGGA--------------GCCGGUa-----GGGGC- -5'
29058 5' -62.3 NC_006146.1 + 13704 0.68 0.531611
Target:  5'- cCGCUUUCGGCcUCUcggguccaccaggcCGGCCGgagggaCCCCGg -3'
miRNA:   3'- -GCGAGAGCCGaGGA--------------GCCGGUa-----GGGGC- -5'
29058 5' -62.3 NC_006146.1 + 16782 0.68 0.531611
Target:  5'- cCGCUUUCGGCcUCUcggguccaccaggcCGGCCGgagggaCCCCGg -3'
miRNA:   3'- -GCGAGAGCCGaGGA--------------GCCGGUa-----GGGGC- -5'
29058 5' -62.3 NC_006146.1 + 86734 0.69 0.52508
Target:  5'- uCGCUaC-CGGCaUUCUCGGcCCGUCUCCu -3'
miRNA:   3'- -GCGA-GaGCCG-AGGAGCC-GGUAGGGGc -5'
29058 5' -62.3 NC_006146.1 + 22938 0.69 0.524149
Target:  5'- cCGCUUUCGGCcUCUcgguccaccaggcCGGCCGgagggaCCCCGg -3'
miRNA:   3'- -GCGAGAGCCGaGGA-------------GCCGGUa-----GGGGC- -5'
29058 5' -62.3 NC_006146.1 + 48396 0.69 0.515802
Target:  5'- gGCUCcgCGGcCUCCauucucUCGaccccgccGCCGUCCCCGa -3'
miRNA:   3'- gCGAGa-GCC-GAGG------AGC--------CGGUAGGGGC- -5'
29058 5' -62.3 NC_006146.1 + 128614 0.69 0.506592
Target:  5'- gGCgCUgGGCUaCCU-GGCC-UCCCCGg -3'
miRNA:   3'- gCGaGAgCCGA-GGAgCCGGuAGGGGC- -5'
29058 5' -62.3 NC_006146.1 + 48087 0.69 0.5011
Target:  5'- uCGCUCaCGGCggccgacagcgcggCCUCGGCCG-CCCg- -3'
miRNA:   3'- -GCGAGaGCCGa-------------GGAGCCGGUaGGGgc -5'
29058 5' -62.3 NC_006146.1 + 100892 0.69 0.479401
Target:  5'- -cCUgUCGGCcugggUCUCGGCCgugggGUCCCCGa -3'
miRNA:   3'- gcGAgAGCCGa----GGAGCCGG-----UAGGGGC- -5'
29058 5' -62.3 NC_006146.1 + 39796 0.7 0.4608
Target:  5'- aGCUCcCGGCUUCUgggacggCGGCCGUUgacggCCCGg -3'
miRNA:   3'- gCGAGaGCCGAGGA-------GCCGGUAG-----GGGC- -5'
29058 5' -62.3 NC_006146.1 + 110445 0.7 0.449477
Target:  5'- cCGCUCcccgCGGCcugccgcUCaCUCGGCCAUggucugacauuccaCCCCGg -3'
miRNA:   3'- -GCGAGa---GCCG-------AG-GAGCCGGUA--------------GGGGC- -5'
29058 5' -62.3 NC_006146.1 + 65062 0.7 0.444304
Target:  5'- aGCUCUUGGCagcgccUCCggaugUCGGCCGgggaCCCCu -3'
miRNA:   3'- gCGAGAGCCG------AGG-----AGCCGGUa---GGGGc -5'
29058 5' -62.3 NC_006146.1 + 96635 0.7 0.444304
Target:  5'- cCGCaacCGGCUCUUUGGCCAg-CCCGg -3'
miRNA:   3'- -GCGagaGCCGAGGAGCCGGUagGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.