miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2906 3' -55.2 NC_001493.1 + 134110 0.67 0.891678
Target:  5'- -----cGCCCCGuGGCCGUGGACGg-- -3'
miRNA:   3'- cuauacCGGGGC-CUGGCAUUUGCggg -5'
2906 3' -55.2 NC_001493.1 + 40833 0.67 0.884812
Target:  5'- --cGUGGaugaaaaaCCCCGGguccgaGCCGUGGACGCg- -3'
miRNA:   3'- cuaUACC--------GGGGCC------UGGCAUUUGCGgg -5'
2906 3' -55.2 NC_001493.1 + 92968 0.67 0.87772
Target:  5'- gGGUggGGCgagCUC-GACCGUGAGCGUCCc -3'
miRNA:   3'- -CUAuaCCG---GGGcCUGGCAUUUGCGGG- -5'
2906 3' -55.2 NC_001493.1 + 77733 0.67 0.87772
Target:  5'- --cGUGGUCauGGACCGcgccAUGCCCa -3'
miRNA:   3'- cuaUACCGGggCCUGGCauu-UGCGGG- -5'
2906 3' -55.2 NC_001493.1 + 70866 0.67 0.870404
Target:  5'- ---cUGGaaCCCCGGuccaucgcccucGCUGUAcACGCCCu -3'
miRNA:   3'- cuauACC--GGGGCC------------UGGCAUuUGCGGG- -5'
2906 3' -55.2 NC_001493.1 + 68602 0.67 0.870404
Target:  5'- --gGUGGCCgggCCGGACUauggGUucAACGUCCg -3'
miRNA:   3'- cuaUACCGG---GGCCUGG----CAu-UUGCGGG- -5'
2906 3' -55.2 NC_001493.1 + 130101 0.68 0.855128
Target:  5'- ----cGGCggacgaCGGACCGUAuACGCCg -3'
miRNA:   3'- cuauaCCGgg----GCCUGGCAUuUGCGGg -5'
2906 3' -55.2 NC_001493.1 + 14547 0.68 0.855128
Target:  5'- ----cGGCggacgaCGGACCGUAuACGCCg -3'
miRNA:   3'- cuauaCCGgg----GCCUGGCAUuUGCGGg -5'
2906 3' -55.2 NC_001493.1 + 105843 0.68 0.855128
Target:  5'- uAUGUGGUaCCGGuguuccacuacACCcUGGGCGCCCa -3'
miRNA:   3'- cUAUACCGgGGCC-----------UGGcAUUUGCGGG- -5'
2906 3' -55.2 NC_001493.1 + 35343 0.68 0.84718
Target:  5'- ----cGaGCCCauGACCGUGGACGUCg -3'
miRNA:   3'- cuauaC-CGGGgcCUGGCAUUUGCGGg -5'
2906 3' -55.2 NC_001493.1 + 16767 0.68 0.84718
Target:  5'- cGGUGUGGCaaaCC--GCCGUu--CGCCCg -3'
miRNA:   3'- -CUAUACCGg--GGccUGGCAuuuGCGGG- -5'
2906 3' -55.2 NC_001493.1 + 132321 0.68 0.84718
Target:  5'- cGGUGUGGCaaaCC--GCCGUu--CGCCCg -3'
miRNA:   3'- -CUAUACCGg--GGccUGGCAuuuGCGGG- -5'
2906 3' -55.2 NC_001493.1 + 107417 0.68 0.846374
Target:  5'- cGUGUGGauuccggccacccCCCCgGGACCGgugucAACGCCg -3'
miRNA:   3'- cUAUACC-------------GGGG-CCUGGCau---UUGCGGg -5'
2906 3' -55.2 NC_001493.1 + 87739 0.68 0.839033
Target:  5'- --aGUGucccCCCCGGAacCCaUGAGCGCCCc -3'
miRNA:   3'- cuaUACc---GGGGCCU--GGcAUUUGCGGG- -5'
2906 3' -55.2 NC_001493.1 + 57405 0.68 0.839033
Target:  5'- ----gGGCCCUGuG-UCGUcAGCGCCCu -3'
miRNA:   3'- cuauaCCGGGGC-CuGGCAuUUGCGGG- -5'
2906 3' -55.2 NC_001493.1 + 133764 0.68 0.830695
Target:  5'- ----aGGCCCCcGACCGcccggGcgUGCCCa -3'
miRNA:   3'- cuauaCCGGGGcCUGGCa----UuuGCGGG- -5'
2906 3' -55.2 NC_001493.1 + 18210 0.68 0.830695
Target:  5'- ----aGGCCCCcGACCGcccggGcgUGCCCa -3'
miRNA:   3'- cuauaCCGGGGcCUGGCa----UuuGCGGG- -5'
2906 3' -55.2 NC_001493.1 + 44039 0.68 0.830695
Target:  5'- ----cGGCCCCucaGACCGUc-GCgGCCCa -3'
miRNA:   3'- cuauaCCGGGGc--CUGGCAuuUG-CGGG- -5'
2906 3' -55.2 NC_001493.1 + 100138 0.68 0.822173
Target:  5'- --cAUGGCCuuGGAuaGUAucGCuGCCCa -3'
miRNA:   3'- cuaUACCGGggCCUggCAUu-UG-CGGG- -5'
2906 3' -55.2 NC_001493.1 + 111257 0.68 0.822173
Target:  5'- aGGUAcaggGGCuCCCGGGCuCGUAAACGagUCg -3'
miRNA:   3'- -CUAUa---CCG-GGGCCUG-GCAUUUGCg-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.