Results 1 - 20 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2906 | 5' | -63.6 | NC_001493.1 | + | 32732 | 1.06 | 0.000899 |
Target: 5'- cGCGACCGGUCCGGCCCGAGACCCCUUc -3' miRNA: 3'- -CGCUGGCCAGGCCGGGCUCUGGGGAA- -5' |
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2906 | 5' | -63.6 | NC_001493.1 | + | 12815 | 0.75 | 0.170661 |
Target: 5'- gGUGACCGGacccgUCCGGCCCcgugacaGAGACCCg-- -3' miRNA: 3'- -CGCUGGCC-----AGGCCGGG-------CUCUGGGgaa -5' |
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2906 | 5' | -63.6 | NC_001493.1 | + | 128369 | 0.75 | 0.170661 |
Target: 5'- gGUGACCGGacccgUCCGGCCCcgugacaGAGACCCg-- -3' miRNA: 3'- -CGCUGGCC-----AGGCCGGG-------CUCUGGGgaa -5' |
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2906 | 5' | -63.6 | NC_001493.1 | + | 126406 | 0.72 | 0.243834 |
Target: 5'- cGCGGCCGGUUCGcGaUCCGGGACUCUc- -3' miRNA: 3'- -CGCUGGCCAGGC-C-GGGCUCUGGGGaa -5' |
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2906 | 5' | -63.6 | NC_001493.1 | + | 10852 | 0.72 | 0.243834 |
Target: 5'- cGCGGCCGGUUCGcGaUCCGGGACUCUc- -3' miRNA: 3'- -CGCUGGCCAGGC-C-GGGCUCUGGGGaa -5' |
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2906 | 5' | -63.6 | NC_001493.1 | + | 112629 | 0.72 | 0.243834 |
Target: 5'- -gGAgCGGcaCCGGUCCGAGACCgCCUUg -3' miRNA: 3'- cgCUgGCCa-GGCCGGGCUCUGG-GGAA- -5' |
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2906 | 5' | -63.6 | NC_001493.1 | + | 90136 | 0.69 | 0.355366 |
Target: 5'- cCGGCCGGUCCGuGCgCGA--CCCCg- -3' miRNA: 3'- cGCUGGCCAGGC-CGgGCUcuGGGGaa -5' |
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2906 | 5' | -63.6 | NC_001493.1 | + | 44300 | 0.69 | 0.362942 |
Target: 5'- uGCcACCaucUCCGGCCCGAGcagGCCCCg- -3' miRNA: 3'- -CGcUGGcc-AGGCCGGGCUC---UGGGGaa -5' |
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2906 | 5' | -63.6 | NC_001493.1 | + | 103195 | 0.69 | 0.386335 |
Target: 5'- cGgGACCGGUUCGGaCCCauucGGGuCCCCc- -3' miRNA: 3'- -CgCUGGCCAGGCC-GGG----CUCuGGGGaa -5' |
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2906 | 5' | -63.6 | NC_001493.1 | + | 32596 | 0.69 | 0.391131 |
Target: 5'- cGCGACCGGgacgggcguuuaCGGUCCGGGGCCa--- -3' miRNA: 3'- -CGCUGGCCag----------GCCGGGCUCUGGggaa -5' |
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2906 | 5' | -63.6 | NC_001493.1 | + | 95382 | 0.68 | 0.409873 |
Target: 5'- gGgGACCGGgcgagCCGuggaaucguucauGCuCCGGGACCCCg- -3' miRNA: 3'- -CgCUGGCCa----GGC-------------CG-GGCUCUGGGGaa -5' |
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2906 | 5' | -63.6 | NC_001493.1 | + | 61478 | 0.67 | 0.471078 |
Target: 5'- cGCGGCU-GUUCGGCCgGGGugUCCa- -3' miRNA: 3'- -CGCUGGcCAGGCCGGgCUCugGGGaa -5' |
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2906 | 5' | -63.6 | NC_001493.1 | + | 44023 | 0.67 | 0.479168 |
Target: 5'- gGCuGAUCGGcUCCcccagGGCCCGAaauacccGGCCCCUc -3' miRNA: 3'- -CG-CUGGCC-AGG-----CCGGGCU-------CUGGGGAa -5' |
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2906 | 5' | -63.6 | NC_001493.1 | + | 114196 | 0.67 | 0.483692 |
Target: 5'- aGC-ACCGGUgcCUGGaacccgcaucuccauCCCGGGACCCCa- -3' miRNA: 3'- -CGcUGGCCA--GGCC---------------GGGCUCUGGGGaa -5' |
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2906 | 5' | -63.6 | NC_001493.1 | + | 1491 | 0.66 | 0.52621 |
Target: 5'- -aGGCCGaGgCCGGUacaGAGACCCCa- -3' miRNA: 3'- cgCUGGC-CaGGCCGgg-CUCUGGGGaa -5' |
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2906 | 5' | -63.6 | NC_001493.1 | + | 117045 | 0.66 | 0.52621 |
Target: 5'- -aGGCCGaGgCCGGUacaGAGACCCCa- -3' miRNA: 3'- cgCUGGC-CaGGCCGgg-CUCUGGGGaa -5' |
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2906 | 5' | -63.6 | NC_001493.1 | + | 29127 | 0.66 | 0.52621 |
Target: 5'- cGCGuCCuuuuuGGUCCGGgCCGuGcCCCCg- -3' miRNA: 3'- -CGCuGG-----CCAGGCCgGGCuCuGGGGaa -5' |
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2906 | 5' | -63.6 | NC_001493.1 | + | 64741 | 0.66 | 0.52621 |
Target: 5'- cGCGACCGGcCCguuGGCCCcguuGAGggucGCCCuCUg -3' miRNA: 3'- -CGCUGGCCaGG---CCGGG----CUC----UGGG-GAa -5' |
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2906 | 5' | -63.6 | NC_001493.1 | + | 106712 | 0.66 | 0.535644 |
Target: 5'- uGUGACgCGGgggggacCCGGgcguauuucccaCCCGAGACCCUg- -3' miRNA: 3'- -CGCUG-GCCa------GGCC------------GGGCUCUGGGGaa -5' |
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2906 | 5' | -63.6 | NC_001493.1 | + | 124371 | 0.66 | 0.535644 |
Target: 5'- cGUGGCCcGUCCGuGUCCGc-ACCCCUc -3' miRNA: 3'- -CGCUGGcCAGGC-CGGGCucUGGGGAa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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