miRNA: 3'- -CGCUGGCCAGGC-C-GGGCUCUGGGGaa -5'
miRNA: 3'- -CGCUGGCC-----AGGCCGGG-------CUCUGGGgaa -5'
miRNA: 3'- -CGCUGGCC-----AGGCCGGG-------CUCUGGGgaa -5'
miRNA: 3'- -CGCUGGCCAGGCCGGGCUCUGGGGAA- -5'
Results 21 - 24 of 24 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 2906 | 5' | -63.6 | NC_001493.1 | + | 126406 | 0.72 | 0.243834 |
|
Target: 5'- cGCGGCCGGUUCGcGaUCCGGGACUCUc- -3' miRNA: 3'- -CGCUGGCCAGGC-C-GGGCUCUGGGGaa -5' |
|||||||
| 2906 | 5' | -63.6 | NC_001493.1 | + | 128369 | 0.75 | 0.170661 |
|
Target: 5'- gGUGACCGGacccgUCCGGCCCcgugacaGAGACCCg-- -3' miRNA: 3'- -CGCUGGCC-----AGGCCGGG-------CUCUGGGgaa -5' |
|||||||
| 2906 | 5' | -63.6 | NC_001493.1 | + | 12815 | 0.75 | 0.170661 |
|
Target: 5'- gGUGACCGGacccgUCCGGCCCcgugacaGAGACCCg-- -3' miRNA: 3'- -CGCUGGCC-----AGGCCGGG-------CUCUGGGgaa -5' |
|||||||
| 2906 | 5' | -63.6 | NC_001493.1 | + | 32732 | 1.06 | 0.000899 |
|
Target: 5'- cGCGACCGGUCCGGCCCGAGACCCCUUc -3' miRNA: 3'- -CGCUGGCCAGGCCGGGCUCUGGGGAA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home