miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29060 3' -47.4 NC_006146.1 + 21561 0.66 0.999923
Target:  5'- aCC-GUAuCCAGuACGUCUUCGUGgaGCc -3'
miRNA:   3'- -GGaCAU-GGUCuUGUAGAAGUACa-CGa -5'
29060 3' -47.4 NC_006146.1 + 12095 0.66 0.999779
Target:  5'- gCCgUGUGCCuGAACAcgcucuUCUUCAg--GCUg -3'
miRNA:   3'- -GG-ACAUGGuCUUGU------AGAAGUacaCGA- -5'
29060 3' -47.4 NC_006146.1 + 86293 0.67 0.999718
Target:  5'- gCUGUaACgAGAGCAgaagCggCAUGUGCc -3'
miRNA:   3'- gGACA-UGgUCUUGUa---GaaGUACACGa -5'
29060 3' -47.4 NC_006146.1 + 58629 0.67 0.999643
Target:  5'- --gGUGCCcGGGCAUCUUCAcGggGCUc -3'
miRNA:   3'- ggaCAUGGuCUUGUAGAAGUaCa-CGA- -5'
29060 3' -47.4 NC_006146.1 + 74494 0.67 0.999643
Target:  5'- gCUGUguucaggaGCUGGcACAUCUUCGcGUGCUc -3'
miRNA:   3'- gGACA--------UGGUCuUGUAGAAGUaCACGA- -5'
29060 3' -47.4 NC_006146.1 + 166496 0.67 0.999302
Target:  5'- cCCUGgaccguCCGGAAgauaAUCUUCAUG-GCg -3'
miRNA:   3'- -GGACau----GGUCUUg---UAGAAGUACaCGa -5'
29060 3' -47.4 NC_006146.1 + 12585 0.69 0.997573
Target:  5'- uCCU---CCAGGACAUCUcccugcccaucugCAUGUGCUa -3'
miRNA:   3'- -GGAcauGGUCUUGUAGAa------------GUACACGA- -5'
29060 3' -47.4 NC_006146.1 + 139719 0.71 0.987827
Target:  5'- cUCUGUGCCagcugAGAGCAUUUUUcUGUGUg -3'
miRNA:   3'- -GGACAUGG-----UCUUGUAGAAGuACACGa -5'
29060 3' -47.4 NC_006146.1 + 27212 0.72 0.977757
Target:  5'- aCCgGUGCCAGGACAcgggCUUCcUGaUGCUc -3'
miRNA:   3'- -GGaCAUGGUCUUGUa---GAAGuAC-ACGA- -5'
29060 3' -47.4 NC_006146.1 + 129664 0.72 0.975164
Target:  5'- gUCUGUACCAGAGCAgggccggucUCUUCAgc-GCc -3'
miRNA:   3'- -GGACAUGGUCUUGU---------AGAAGUacaCGa -5'
29060 3' -47.4 NC_006146.1 + 115884 0.73 0.958834
Target:  5'- gCCUGggcgauauagGCCauggGGGACAUCUUgAUGUGCa -3'
miRNA:   3'- -GGACa---------UGG----UCUUGUAGAAgUACACGa -5'
29060 3' -47.4 NC_006146.1 + 42355 0.83 0.583026
Target:  5'- gUCUGaGCCGGGACGUCUUCGUG-GCg -3'
miRNA:   3'- -GGACaUGGUCUUGUAGAAGUACaCGa -5'
29060 3' -47.4 NC_006146.1 + 96361 1.12 0.015002
Target:  5'- gCCUGUACCAGAACAUCUUCAUGUGCUa -3'
miRNA:   3'- -GGACAUGGUCUUGUAGAAGUACACGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.