miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29060 5' -54.5 NC_006146.1 + 64565 0.66 0.965596
Target:  5'- uGGGCAggaaGC-AGGGg--GCCAGCUCCu -3'
miRNA:   3'- cCUCGUg---CGcUUCUacaCGGUCGAGG- -5'
29060 5' -54.5 NC_006146.1 + 99393 0.66 0.965596
Target:  5'- aGGAGCGaGuCGGccagGGggGUGCCGGCaacgCCc -3'
miRNA:   3'- -CCUCGUgC-GCU----UCuaCACGGUCGa---GG- -5'
29060 5' -54.5 NC_006146.1 + 141485 0.66 0.965596
Target:  5'- uGGAGUAUGCuGGAGGUcUGCCA-CUUg -3'
miRNA:   3'- -CCUCGUGCG-CUUCUAcACGGUcGAGg -5'
29060 5' -54.5 NC_006146.1 + 109197 0.66 0.965273
Target:  5'- gGGGGCAUguagggcaucagaGCGcAGGUGUGgUgGGCUCUu -3'
miRNA:   3'- -CCUCGUG-------------CGCuUCUACAC-GgUCGAGG- -5'
29060 5' -54.5 NC_006146.1 + 67378 0.66 0.965273
Target:  5'- cGAGUACGgGGAGGggggcucgGUGCggauguuCAGCUUCu -3'
miRNA:   3'- cCUCGUGCgCUUCUa-------CACG-------GUCGAGG- -5'
29060 5' -54.5 NC_006146.1 + 127421 0.66 0.964619
Target:  5'- cGGAGCcggugucaacggccGC-CGAGGAggcUGCC-GCUCCa -3'
miRNA:   3'- -CCUCG--------------UGcGCUUCUac-ACGGuCGAGG- -5'
29060 5' -54.5 NC_006146.1 + 82355 0.66 0.962263
Target:  5'- cGGAGCAC-CacGGAUGcaGCCaucgcgGGCUCCa -3'
miRNA:   3'- -CCUCGUGcGcuUCUACa-CGG------UCGAGG- -5'
29060 5' -54.5 NC_006146.1 + 41358 0.66 0.962263
Target:  5'- aGGGcCugGCGguGGUG-GCCguGGCUCUg -3'
miRNA:   3'- cCUC-GugCGCuuCUACaCGG--UCGAGG- -5'
29060 5' -54.5 NC_006146.1 + 100067 0.66 0.962263
Target:  5'- aGGGGCugGa--AGAUGagGCCGuGUUCCu -3'
miRNA:   3'- -CCUCGugCgcuUCUACa-CGGU-CGAGG- -5'
29060 5' -54.5 NC_006146.1 + 159360 0.66 0.962263
Target:  5'- -cAGCAUgGCGggGgcGUagcugaccGCCAGCUCg -3'
miRNA:   3'- ccUCGUG-CGCuuCuaCA--------CGGUCGAGg -5'
29060 5' -54.5 NC_006146.1 + 103637 0.66 0.962263
Target:  5'- -uGGCACGCGGAGGaGggGCCcGCcuaUCCc -3'
miRNA:   3'- ccUCGUGCGCUUCUaCa-CGGuCG---AGG- -5'
29060 5' -54.5 NC_006146.1 + 10274 0.66 0.962263
Target:  5'- aGGAgaauGUACGCGGAGcUGgcaUGCCAGgCggCCg -3'
miRNA:   3'- -CCU----CGUGCGCUUCuAC---ACGGUC-Ga-GG- -5'
29060 5' -54.5 NC_006146.1 + 75262 0.66 0.962263
Target:  5'- uGGGGUGCaCGggGAUG-GCCgaggagccgagAGCgUCCg -3'
miRNA:   3'- -CCUCGUGcGCuuCUACaCGG-----------UCG-AGG- -5'
29060 5' -54.5 NC_006146.1 + 89018 0.66 0.962263
Target:  5'- cGGAGCcUGCcguGGAUGUugggucugagGCCgaGGCUCCc -3'
miRNA:   3'- -CCUCGuGCGcu-UCUACA----------CGG--UCGAGG- -5'
29060 5' -54.5 NC_006146.1 + 7192 0.66 0.961918
Target:  5'- aGGAagGCAUGCG-AGAUGUGgCCccaccaaGGC-CCa -3'
miRNA:   3'- -CCU--CGUGCGCuUCUACAC-GG-------UCGaGG- -5'
29060 5' -54.5 NC_006146.1 + 68731 0.66 0.961221
Target:  5'- aGAGCuguCGCGGggugguggaggcccAGGUG-GCCAaGCUUCa -3'
miRNA:   3'- cCUCGu--GCGCU--------------UCUACaCGGU-CGAGG- -5'
29060 5' -54.5 NC_006146.1 + 108137 0.66 0.960158
Target:  5'- uGAGCACGaUGAGGGUGacGUUcauguggguccgcggGGCUCCg -3'
miRNA:   3'- cCUCGUGC-GCUUCUACa-CGG---------------UCGAGG- -5'
29060 5' -54.5 NC_006146.1 + 52483 0.66 0.958711
Target:  5'- cGGuccugaGCGUGAAGcUGcGCCAuGCUCCg -3'
miRNA:   3'- -CCucg---UGCGCUUCuACaCGGU-CGAGG- -5'
29060 5' -54.5 NC_006146.1 + 132462 0.66 0.958711
Target:  5'- cGGAgGCAgGgGAu-GUGUGCCAGCagaggCCc -3'
miRNA:   3'- -CCU-CGUgCgCUucUACACGGUCGa----GG- -5'
29060 5' -54.5 NC_006146.1 + 165978 0.66 0.958711
Target:  5'- aGAGCACggccacccgacaGCGAGGGU---CCGGCUCUg -3'
miRNA:   3'- cCUCGUG------------CGCUUCUAcacGGUCGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.