miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29060 5' -54.5 NC_006146.1 + 109197 0.66 0.965273
Target:  5'- gGGGGCAUguagggcaucagaGCGcAGGUGUGgUgGGCUCUu -3'
miRNA:   3'- -CCUCGUG-------------CGCuUCUACAC-GgUCGAGG- -5'
29060 5' -54.5 NC_006146.1 + 15293 0.66 0.950935
Target:  5'- cGGAGCGaggGgGAGGAggGgccggagGCCAGCcCCg -3'
miRNA:   3'- -CCUCGUg--CgCUUCUa-Ca------CGGUCGaGG- -5'
29060 5' -54.5 NC_006146.1 + 19061 0.66 0.950935
Target:  5'- --cGCACGa-GAGAUGUGCC-GCcauUCCa -3'
miRNA:   3'- ccuCGUGCgcUUCUACACGGuCG---AGG- -5'
29060 5' -54.5 NC_006146.1 + 70593 0.66 0.948424
Target:  5'- gGGAGgAUGUGGAGAcucUGaucgcggugcaggccUGCCAGCcCCc -3'
miRNA:   3'- -CCUCgUGCGCUUCU---AC---------------ACGGUCGaGG- -5'
29060 5' -54.5 NC_006146.1 + 17912 0.66 0.946703
Target:  5'- aGAagAUGaCGGAGAUGUGCCuGGCgUCCa -3'
miRNA:   3'- cCUcgUGC-GCUUCUACACGG-UCG-AGG- -5'
29060 5' -54.5 NC_006146.1 + 9703 0.66 0.946703
Target:  5'- uGGGGCACGgG-----GUGCCAGUUgCCu -3'
miRNA:   3'- -CCUCGUGCgCuucuaCACGGUCGA-GG- -5'
29060 5' -54.5 NC_006146.1 + 167743 0.66 0.946703
Target:  5'- gGGGGCGCgGCGAu--UGUcGCCGcccucccucuGCUCCc -3'
miRNA:   3'- -CCUCGUG-CGCUucuACA-CGGU----------CGAGG- -5'
29060 5' -54.5 NC_006146.1 + 168675 0.66 0.946703
Target:  5'- gGGGGCGCgGCGAu--UGUcGCCGcccucccucuGCUCCc -3'
miRNA:   3'- -CCUCGUG-CGCUucuACA-CGGU----------CGAGG- -5'
29060 5' -54.5 NC_006146.1 + 169608 0.66 0.946703
Target:  5'- gGGGGCGCgGCGAu--UGUcGCCGcccucccucuGCUCCc -3'
miRNA:   3'- -CCUCGUG-CGCUucuACA-CGGU----------CGAGG- -5'
29060 5' -54.5 NC_006146.1 + 41362 0.66 0.950935
Target:  5'- uGGAGaCACGUGuccucuGGUGgggcauccgGCC-GCUCCa -3'
miRNA:   3'- -CCUC-GUGCGCuu----CUACa--------CGGuCGAGG- -5'
29060 5' -54.5 NC_006146.1 + 33234 0.66 0.954937
Target:  5'- uGGGGCugGgGuuccGGggGUGggGGCUCCa -3'
miRNA:   3'- -CCUCGugCgCu---UCuaCACggUCGAGG- -5'
29060 5' -54.5 NC_006146.1 + 52483 0.66 0.958711
Target:  5'- cGGuccugaGCGUGAAGcUGcGCCAuGCUCCg -3'
miRNA:   3'- -CCucg---UGCGCUUCuACaCGGU-CGAGG- -5'
29060 5' -54.5 NC_006146.1 + 127421 0.66 0.964619
Target:  5'- cGGAGCcggugucaacggccGC-CGAGGAggcUGCC-GCUCCa -3'
miRNA:   3'- -CCUCG--------------UGcGCUUCUac-ACGGuCGAGG- -5'
29060 5' -54.5 NC_006146.1 + 89018 0.66 0.962263
Target:  5'- cGGAGCcUGCcguGGAUGUugggucugagGCCgaGGCUCCc -3'
miRNA:   3'- -CCUCGuGCGcu-UCUACA----------CGG--UCGAGG- -5'
29060 5' -54.5 NC_006146.1 + 75262 0.66 0.962263
Target:  5'- uGGGGUGCaCGggGAUG-GCCgaggagccgagAGCgUCCg -3'
miRNA:   3'- -CCUCGUGcGCuuCUACaCGG-----------UCG-AGG- -5'
29060 5' -54.5 NC_006146.1 + 10274 0.66 0.962263
Target:  5'- aGGAgaauGUACGCGGAGcUGgcaUGCCAGgCggCCg -3'
miRNA:   3'- -CCU----CGUGCGCUUCuAC---ACGGUC-Ga-GG- -5'
29060 5' -54.5 NC_006146.1 + 103637 0.66 0.962263
Target:  5'- -uGGCACGCGGAGGaGggGCCcGCcuaUCCc -3'
miRNA:   3'- ccUCGUGCGCUUCUaCa-CGGuCG---AGG- -5'
29060 5' -54.5 NC_006146.1 + 7192 0.66 0.961918
Target:  5'- aGGAagGCAUGCG-AGAUGUGgCCccaccaaGGC-CCa -3'
miRNA:   3'- -CCU--CGUGCGCuUCUACAC-GG-------UCGaGG- -5'
29060 5' -54.5 NC_006146.1 + 165978 0.66 0.958711
Target:  5'- aGAGCACggccacccgacaGCGAGGGU---CCGGCUCUg -3'
miRNA:   3'- cCUCGUG------------CGCUUCUAcacGGUCGAGG- -5'
29060 5' -54.5 NC_006146.1 + 132462 0.66 0.958711
Target:  5'- cGGAgGCAgGgGAu-GUGUGCCAGCagaggCCc -3'
miRNA:   3'- -CCU-CGUgCgCUucUACACGGUCGa----GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.