miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29060 5' -54.5 NC_006146.1 + 2853 0.67 0.942237
Target:  5'- cGGGGUGC-CGGuuGUG-GCCGGCUUCu -3'
miRNA:   3'- -CCUCGUGcGCUucUACaCGGUCGAGG- -5'
29060 5' -54.5 NC_006146.1 + 3800 0.78 0.398181
Target:  5'- gGGGGCACGCgGggGAUG-GCCAcGCcCCc -3'
miRNA:   3'- -CCUCGUGCG-CuuCUACaCGGU-CGaGG- -5'
29060 5' -54.5 NC_006146.1 + 7192 0.66 0.961918
Target:  5'- aGGAagGCAUGCG-AGAUGUGgCCccaccaaGGC-CCa -3'
miRNA:   3'- -CCU--CGUGCGCuUCUACAC-GG-------UCGaGG- -5'
29060 5' -54.5 NC_006146.1 + 8947 0.67 0.937534
Target:  5'- uGGGGCugGgGAAGuuuaGCCuGCUgCCa -3'
miRNA:   3'- -CCUCGugCgCUUCuacaCGGuCGA-GG- -5'
29060 5' -54.5 NC_006146.1 + 9703 0.66 0.946703
Target:  5'- uGGGGCACGgG-----GUGCCAGUUgCCu -3'
miRNA:   3'- -CCUCGUGCgCuucuaCACGGUCGA-GG- -5'
29060 5' -54.5 NC_006146.1 + 10274 0.66 0.962263
Target:  5'- aGGAgaauGUACGCGGAGcUGgcaUGCCAGgCggCCg -3'
miRNA:   3'- -CCU----CGUGCGCUUCuAC---ACGGUC-Ga-GG- -5'
29060 5' -54.5 NC_006146.1 + 13083 0.67 0.929516
Target:  5'- cGGGGCcaGCGCGGAGGaguacucggaccUG-GCCcuguuuguggacgggGGCUCCc -3'
miRNA:   3'- -CCUCG--UGCGCUUCU------------ACaCGG---------------UCGAGG- -5'
29060 5' -54.5 NC_006146.1 + 13265 0.67 0.927415
Target:  5'- aGGGGCugGUGcccaagacccAGGcgGUGCCcGC-CCg -3'
miRNA:   3'- -CCUCGugCGC----------UUCuaCACGGuCGaGG- -5'
29060 5' -54.5 NC_006146.1 + 13851 0.7 0.813701
Target:  5'- cGGAGgGaccccgGCGGcccGGUGUGCCAGCgUCCc -3'
miRNA:   3'- -CCUCgUg-----CGCUu--CUACACGGUCG-AGG- -5'
29060 5' -54.5 NC_006146.1 + 14036 0.67 0.925277
Target:  5'- gGGAGCAgGCGggGGcaggcgcaagcGCCGGCUg- -3'
miRNA:   3'- -CCUCGUgCGCuuCUaca--------CGGUCGAgg -5'
29060 5' -54.5 NC_006146.1 + 15293 0.66 0.950935
Target:  5'- cGGAGCGaggGgGAGGAggGgccggagGCCAGCcCCg -3'
miRNA:   3'- -CCUCGUg--CgCUUCUa-Ca------CGGUCGaGG- -5'
29060 5' -54.5 NC_006146.1 + 16929 0.7 0.813701
Target:  5'- cGGAGgGaccccgGCGGcccGGUGUGCCAGCgUCCc -3'
miRNA:   3'- -CCUCgUg-----CGCUu--CUACACGGUCG-AGG- -5'
29060 5' -54.5 NC_006146.1 + 17912 0.66 0.946703
Target:  5'- aGAagAUGaCGGAGAUGUGCCuGGCgUCCa -3'
miRNA:   3'- cCUcgUGC-GCUUCUACACGG-UCG-AGG- -5'
29060 5' -54.5 NC_006146.1 + 19061 0.66 0.950935
Target:  5'- --cGCACGa-GAGAUGUGCC-GCcauUCCa -3'
miRNA:   3'- ccuCGUGCgcUUCUACACGGuCG---AGG- -5'
29060 5' -54.5 NC_006146.1 + 20006 0.7 0.813701
Target:  5'- cGGAGgGaccccgGCGGcccGGUGUGCCAGCgUCCc -3'
miRNA:   3'- -CCUCgUg-----CGCUu--CUACACGGUCG-AGG- -5'
29060 5' -54.5 NC_006146.1 + 21279 0.67 0.926884
Target:  5'- uGGuGCugGCGGacgcccggguaaaGGAggcgGCCAGcCUCCu -3'
miRNA:   3'- -CCuCGugCGCU-------------UCUaca-CGGUC-GAGG- -5'
29060 5' -54.5 NC_006146.1 + 23084 0.7 0.813701
Target:  5'- cGGAGgGaccccgGCGGcccGGUGUGCCAGCgUCCc -3'
miRNA:   3'- -CCUCgUg-----CGCUu--CUACACGGUCG-AGG- -5'
29060 5' -54.5 NC_006146.1 + 24354 0.67 0.927415
Target:  5'- aGGAGCuacaaguaGUGgcGcaggGCCAGCUCCa -3'
miRNA:   3'- -CCUCGug------CGCuuCuacaCGGUCGAGG- -5'
29060 5' -54.5 NC_006146.1 + 26162 0.7 0.813701
Target:  5'- cGGAGgGaccccgGCGGcccGGUGUGCCAGCgUCCc -3'
miRNA:   3'- -CCUCgUg-----CGCUu--CUACACGGUCG-AGG- -5'
29060 5' -54.5 NC_006146.1 + 26264 0.67 0.92255
Target:  5'- gGGGGCACGgGuggcggaauuagccuGGGUGgagggGCCGGCaUCUg -3'
miRNA:   3'- -CCUCGUGCgCu--------------UCUACa----CGGUCG-AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.