Results 21 - 35 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29061 | 5' | -56.3 | NC_006146.1 | + | 28282 | 0.68 | 0.826156 |
Target: 5'- gUCUCgGGuCugGG-GGUCugugguggugagccuGGUGCCUCu -3' miRNA: 3'- -AGAGgUC-GugCCaCCAGu--------------UCACGGAG- -5' |
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29061 | 5' | -56.3 | NC_006146.1 | + | 25204 | 0.68 | 0.826156 |
Target: 5'- gUCUCgGGuCugGG-GGUCugugguggugagccuGGUGCCUCu -3' miRNA: 3'- -AGAGgUC-GugCCaCCAGu--------------UCACGGAG- -5' |
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29061 | 5' | -56.3 | NC_006146.1 | + | 22126 | 0.68 | 0.826156 |
Target: 5'- gUCUCgGGuCugGG-GGUCugugguggugagccuGGUGCCUCu -3' miRNA: 3'- -AGAGgUC-GugCCaCCAGu--------------UCACGGAG- -5' |
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29061 | 5' | -56.3 | NC_006146.1 | + | 15970 | 0.68 | 0.826156 |
Target: 5'- gUCUCgGGuCugGG-GGUCugugguggugagccuGGUGCCUCu -3' miRNA: 3'- -AGAGgUC-GugCCaCCAGu--------------UCACGGAG- -5' |
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29061 | 5' | -56.3 | NC_006146.1 | + | 12893 | 0.68 | 0.826156 |
Target: 5'- gUCUCgGGuCugGG-GGUCugugguggugagccuGGUGCCUCu -3' miRNA: 3'- -AGAGgUC-GugCCaCCAGu--------------UCACGGAG- -5' |
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29061 | 5' | -56.3 | NC_006146.1 | + | 101075 | 0.69 | 0.780937 |
Target: 5'- cUCgCCGGuCugGGUGGUCAAG-GCUc- -3' miRNA: 3'- -AGaGGUC-GugCCACCAGUUCaCGGag -5' |
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29061 | 5' | -56.3 | NC_006146.1 | + | 54033 | 0.7 | 0.704503 |
Target: 5'- cCUCCGGagggcggccaugucgGCGGUGGUCAGG-GCC-Ca -3' miRNA: 3'- aGAGGUCg--------------UGCCACCAGUUCaCGGaG- -5' |
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29061 | 5' | -56.3 | NC_006146.1 | + | 47665 | 0.7 | 0.703501 |
Target: 5'- --cCCAGCGCGGcGGcCAGG-GUCUCg -3' miRNA: 3'- agaGGUCGUGCCaCCaGUUCaCGGAG- -5' |
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29061 | 5' | -56.3 | NC_006146.1 | + | 109544 | 0.71 | 0.632413 |
Target: 5'- cCUCCucgcaguacacgGGCACGcUGGUgaAGGUGCCUCg -3' miRNA: 3'- aGAGG------------UCGUGCcACCAg-UUCACGGAG- -5' |
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29061 | 5' | -56.3 | NC_006146.1 | + | 50869 | 0.71 | 0.632413 |
Target: 5'- gUCUCC-GCGCGG-GGUCu-GUGCC-Cg -3' miRNA: 3'- -AGAGGuCGUGCCaCCAGuuCACGGaG- -5' |
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29061 | 5' | -56.3 | NC_006146.1 | + | 46823 | 0.72 | 0.581451 |
Target: 5'- uUCUCCAGCACGGUGGgCA--UGacguaCUCc -3' miRNA: 3'- -AGAGGUCGUGCCACCaGUucACg----GAG- -5' |
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29061 | 5' | -56.3 | NC_006146.1 | + | 142686 | 0.73 | 0.511781 |
Target: 5'- cCUCCGGCugGGUcggacGGUCuGGUGCgUUg -3' miRNA: 3'- aGAGGUCGugCCA-----CCAGuUCACGgAG- -5' |
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29061 | 5' | -56.3 | NC_006146.1 | + | 142877 | 0.74 | 0.454947 |
Target: 5'- cCUCCGGCugGGUcggacGGUCuGGUGCgCUUg -3' miRNA: 3'- aGAGGUCGugCCA-----CCAGuUCACG-GAG- -5' |
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29061 | 5' | -56.3 | NC_006146.1 | + | 113410 | 0.75 | 0.410301 |
Target: 5'- --aCCAGCGCGGUggcucGGUCAGG-GUCUCg -3' miRNA: 3'- agaGGUCGUGCCA-----CCAGUUCaCGGAG- -5' |
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29061 | 5' | -56.3 | NC_006146.1 | + | 96693 | 1.11 | 0.002151 |
Target: 5'- gUCUCCAGCACGGUGGUCAAGUGCCUCa -3' miRNA: 3'- -AGAGGUCGUGCCACCAGUUCACGGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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