miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29062 3' -54.2 NC_006146.1 + 95521 0.66 0.966436
Target:  5'- -gGGA---GCUGuCGGGUgcGGCGCCUg -3'
miRNA:   3'- cgCCUauaUGACuGCCCG--UCGUGGAg -5'
29062 3' -54.2 NC_006146.1 + 131715 0.66 0.963132
Target:  5'- uGCGGcc-UGCUGAUGGGCAccugagagacacGgACCUg -3'
miRNA:   3'- -CGCCuauAUGACUGCCCGU------------CgUGGAg -5'
29062 3' -54.2 NC_006146.1 + 39518 0.66 0.963132
Target:  5'- uGUGGGUG-GCUGAUGGGCugggggaggcGGCGCa-- -3'
miRNA:   3'- -CGCCUAUaUGACUGCCCG----------UCGUGgag -5'
29062 3' -54.2 NC_006146.1 + 74031 0.66 0.959608
Target:  5'- cGCGGAUGcagucucggcgGCUGACGcGGCAGagGCUg- -3'
miRNA:   3'- -CGCCUAUa----------UGACUGC-CCGUCg-UGGag -5'
29062 3' -54.2 NC_006146.1 + 44387 0.66 0.959243
Target:  5'- cCGGGgg-GCgUGugGGGCcgggcacGGCGCCUUc -3'
miRNA:   3'- cGCCUauaUG-ACugCCCG-------UCGUGGAG- -5'
29062 3' -54.2 NC_006146.1 + 92240 0.66 0.955858
Target:  5'- cGUGuuUAUGCUGugGGGUgcgaaGGCaggagauaaaGCCUCa -3'
miRNA:   3'- -CGCcuAUAUGACugCCCG-----UCG----------UGGAG- -5'
29062 3' -54.2 NC_006146.1 + 96826 0.66 0.955858
Target:  5'- gGUGGGg--ACgGGCGGGCAGguugggccCGCUUCa -3'
miRNA:   3'- -CGCCUauaUGaCUGCCCGUC--------GUGGAG- -5'
29062 3' -54.2 NC_006146.1 + 116498 0.66 0.951879
Target:  5'- cGCGGAggagcgGCgcGAgGaGGCGGCACCa- -3'
miRNA:   3'- -CGCCUaua---UGa-CUgC-CCGUCGUGGag -5'
29062 3' -54.2 NC_006146.1 + 120578 0.66 0.950222
Target:  5'- cGCGGAUGgcaaguUUGACcuggacaaggcccGGCGGCGCCUg -3'
miRNA:   3'- -CGCCUAUau----GACUGc------------CCGUCGUGGAg -5'
29062 3' -54.2 NC_006146.1 + 139339 0.66 0.947666
Target:  5'- -gGGAUGUuCUGgugauguuAgGGGCGGCGCCg- -3'
miRNA:   3'- cgCCUAUAuGAC--------UgCCCGUCGUGGag -5'
29062 3' -54.2 NC_006146.1 + 120750 0.66 0.947666
Target:  5'- cUGGuc---CUGACGacgagcgcuGGCGGCGCCUCa -3'
miRNA:   3'- cGCCuauauGACUGC---------CCGUCGUGGAG- -5'
29062 3' -54.2 NC_006146.1 + 85305 0.66 0.947666
Target:  5'- cCGGugccaGCUuccgaGGCGGGCGGCuGCCUCc -3'
miRNA:   3'- cGCCuaua-UGA-----CUGCCCGUCG-UGGAG- -5'
29062 3' -54.2 NC_006146.1 + 13764 0.66 0.946795
Target:  5'- cGUGGAcgccaugGGCGaGGCGuGCGCCUCg -3'
miRNA:   3'- -CGCCUauauga-CUGC-CCGU-CGUGGAG- -5'
29062 3' -54.2 NC_006146.1 + 62455 0.67 0.943216
Target:  5'- aGUGGAccuugGUACgGACGGGCAcugcgucCACCUg -3'
miRNA:   3'- -CGCCUa----UAUGaCUGCCCGUc------GUGGAg -5'
29062 3' -54.2 NC_006146.1 + 48632 0.67 0.943216
Target:  5'- cGUGGGggcggGCUccgGGCGGGUgcccAGCGCCUUc -3'
miRNA:   3'- -CGCCUaua--UGA---CUGCCCG----UCGUGGAG- -5'
29062 3' -54.2 NC_006146.1 + 151402 0.67 0.943216
Target:  5'- gGCGGGgga--UGGCGcGGCGGCAgCUg -3'
miRNA:   3'- -CGCCUauaugACUGC-CCGUCGUgGAg -5'
29062 3' -54.2 NC_006146.1 + 9292 0.67 0.943216
Target:  5'- uUGGAUAgcacaUACUGccggcCGGGCAGCAUUUg -3'
miRNA:   3'- cGCCUAU-----AUGACu----GCCCGUCGUGGAg -5'
29062 3' -54.2 NC_006146.1 + 115188 0.67 0.943216
Target:  5'- cGCGGAg--GCcagcGGCGGGCAGaGCCc- -3'
miRNA:   3'- -CGCCUauaUGa---CUGCCCGUCgUGGag -5'
29062 3' -54.2 NC_006146.1 + 72180 0.67 0.941835
Target:  5'- uGCGGGUcgACgagGACGcGGCGGCcggaugggcgggagACCa- -3'
miRNA:   3'- -CGCCUAuaUGa--CUGC-CCGUCG--------------UGGag -5'
29062 3' -54.2 NC_006146.1 + 44197 0.67 0.933597
Target:  5'- cGCGGcUGcACUGcagccGgGGGCGGUGCCUUg -3'
miRNA:   3'- -CGCCuAUaUGAC-----UgCCCGUCGUGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.