miRNA display CGI


Results 1 - 20 of 60 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29062 3' -54.2 NC_006146.1 + 96892 1.11 0.003319
Target:  5'- cGCGGAUAUACUGACGGGCAGCACCUCc -3'
miRNA:   3'- -CGCCUAUAUGACUGCCCGUCGUGGAG- -5'
29062 3' -54.2 NC_006146.1 + 101073 0.86 0.143694
Target:  5'- aCGGGcucAUGCUGugGGGCAGCACUUCg -3'
miRNA:   3'- cGCCUa--UAUGACugCCCGUCGUGGAG- -5'
29062 3' -54.2 NC_006146.1 + 56803 0.76 0.506171
Target:  5'- gGCGGccGU-CUGGCGGGCGGgGCUUCu -3'
miRNA:   3'- -CGCCuaUAuGACUGCCCGUCgUGGAG- -5'
29062 3' -54.2 NC_006146.1 + 111034 0.75 0.555942
Target:  5'- aCGGA---GCUGAUGGGCGaCACCUCc -3'
miRNA:   3'- cGCCUauaUGACUGCCCGUcGUGGAG- -5'
29062 3' -54.2 NC_006146.1 + 151678 0.75 0.56608
Target:  5'- cUGGGgg-ACUGA-GGGCGGCGCCUUg -3'
miRNA:   3'- cGCCUauaUGACUgCCCGUCGUGGAG- -5'
29062 3' -54.2 NC_006146.1 + 120692 0.75 0.576264
Target:  5'- cGCGGGUGcACgGGCGGacgcuggaGCAGCACCUg -3'
miRNA:   3'- -CGCCUAUaUGaCUGCC--------CGUCGUGGAg -5'
29062 3' -54.2 NC_006146.1 + 21175 0.74 0.607033
Target:  5'- cGUGGggGUGCUGACGGaCGGCaagACCUUg -3'
miRNA:   3'- -CGCCuaUAUGACUGCCcGUCG---UGGAG- -5'
29062 3' -54.2 NC_006146.1 + 128659 0.72 0.719631
Target:  5'- uCGGGgacgGCgggGACGGGCaggagacaacgGGCGCCUCg -3'
miRNA:   3'- cGCCUaua-UGa--CUGCCCG-----------UCGUGGAG- -5'
29062 3' -54.2 NC_006146.1 + 72437 0.71 0.745348
Target:  5'- cGCGGAcugacccagagACUGGCccccGGGCGGCGCCg- -3'
miRNA:   3'- -CGCCUaua--------UGACUG----CCCGUCGUGGag -5'
29062 3' -54.2 NC_006146.1 + 67933 0.71 0.78723
Target:  5'- cGUGGA-GUAUgucccgGAUGGGCGGCugcCCUCg -3'
miRNA:   3'- -CGCCUaUAUGa-----CUGCCCGUCGu--GGAG- -5'
29062 3' -54.2 NC_006146.1 + 102053 0.71 0.796394
Target:  5'- aGUGGGuUGUugUGugGGGgcaAGCACCa- -3'
miRNA:   3'- -CGCCU-AUAugACugCCCg--UCGUGGag -5'
29062 3' -54.2 NC_006146.1 + 100286 0.7 0.814261
Target:  5'- aGCGGGg--GCUGGCaGGCcuGCACCg- -3'
miRNA:   3'- -CGCCUauaUGACUGcCCGu-CGUGGag -5'
29062 3' -54.2 NC_006146.1 + 156246 0.7 0.822946
Target:  5'- cGUGGAcgggGUGCcgugGuuGGGCAGCACCa- -3'
miRNA:   3'- -CGCCUa---UAUGa---CugCCCGUCGUGGag -5'
29062 3' -54.2 NC_006146.1 + 10285 0.7 0.831455
Target:  5'- cGCGGA---GCUGGCaugccaGGCGGCcgACCUCg -3'
miRNA:   3'- -CGCCUauaUGACUGc-----CCGUCG--UGGAG- -5'
29062 3' -54.2 NC_006146.1 + 48321 0.7 0.83978
Target:  5'- uCGGAgGUGCUGGCGGuGguGgGCCa- -3'
miRNA:   3'- cGCCUaUAUGACUGCC-CguCgUGGag -5'
29062 3' -54.2 NC_006146.1 + 128204 0.7 0.83978
Target:  5'- aGCGGGc--GCUGGgGGGCucuGCcaGCCUCa -3'
miRNA:   3'- -CGCCUauaUGACUgCCCGu--CG--UGGAG- -5'
29062 3' -54.2 NC_006146.1 + 56599 0.69 0.871091
Target:  5'- uGCGGAUAUGCuUGAgGuGcGCAuGCAUCUUg -3'
miRNA:   3'- -CGCCUAUAUG-ACUgC-C-CGU-CGUGGAG- -5'
29062 3' -54.2 NC_006146.1 + 40569 0.69 0.876222
Target:  5'- uGCGGGggacGCUGAugagguccuggcccUGGGCGGCcgaACCUCc -3'
miRNA:   3'- -CGCCUaua-UGACU--------------GCCCGUCG---UGGAG- -5'
29062 3' -54.2 NC_006146.1 + 138864 0.69 0.878389
Target:  5'- cCGGGUca--UGACcuGGGcCAGCGCCUCg -3'
miRNA:   3'- cGCCUAuaugACUG--CCC-GUCGUGGAG- -5'
29062 3' -54.2 NC_006146.1 + 71250 0.69 0.885464
Target:  5'- cUGGGgc--CUGGCGGGgGGCgGCCUCu -3'
miRNA:   3'- cGCCUauauGACUGCCCgUCG-UGGAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.