miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29062 3' -54.2 NC_006146.1 + 65188 0.67 0.933597
Target:  5'- uGCGGAUGUgugugACUGGCaGGGggaggaaaUAGCuCCUCc -3'
miRNA:   3'- -CGCCUAUA-----UGACUG-CCC--------GUCGuGGAG- -5'
29062 3' -54.2 NC_006146.1 + 71819 0.67 0.93309
Target:  5'- uGCGGAccugGCUG-CGGGCccuccaccacuacGGCACCcCg -3'
miRNA:   3'- -CGCCUaua-UGACuGCCCG-------------UCGUGGaG- -5'
29062 3' -54.2 NC_006146.1 + 46780 0.67 0.928423
Target:  5'- gGCGGAUG-GCUGGCcGGCcGGCgcgagggcaaagGCCUCu -3'
miRNA:   3'- -CGCCUAUaUGACUGcCCG-UCG------------UGGAG- -5'
29062 3' -54.2 NC_006146.1 + 4498 0.67 0.928423
Target:  5'- uGUGGAgauggcACUGGCGGGcCAGCggggggugaccAUCUCg -3'
miRNA:   3'- -CGCCUaua---UGACUGCCC-GUCG-----------UGGAG- -5'
29062 3' -54.2 NC_006146.1 + 140134 0.67 0.923007
Target:  5'- gGCGGAgGUGgUGGCGGG-GGUGCCcCg -3'
miRNA:   3'- -CGCCUaUAUgACUGCCCgUCGUGGaG- -5'
29062 3' -54.2 NC_006146.1 + 127604 0.68 0.917348
Target:  5'- cCGGGUGagAgUGACuaaccuGGGCGGCACCg- -3'
miRNA:   3'- cGCCUAUa-UgACUG------CCCGUCGUGGag -5'
29062 3' -54.2 NC_006146.1 + 101255 0.68 0.917348
Target:  5'- gGUGGGggacaugGUGCUGG-GGGCAGUcaACCUg -3'
miRNA:   3'- -CGCCUa------UAUGACUgCCCGUCG--UGGAg -5'
29062 3' -54.2 NC_006146.1 + 23413 0.68 0.917348
Target:  5'- cGCuGGAccUGCcgGAgGGGCAGUACCa- -3'
miRNA:   3'- -CG-CCUauAUGa-CUgCCCGUCGUGGag -5'
29062 3' -54.2 NC_006146.1 + 92059 0.68 0.916769
Target:  5'- gGCGGGcccggccuggggcUGcUGCUGGgGGGCGGCccgGCCUg -3'
miRNA:   3'- -CGCCU-------------AU-AUGACUgCCCGUCG---UGGAg -5'
29062 3' -54.2 NC_006146.1 + 145522 0.68 0.911447
Target:  5'- cUGGGgg-ACUGA-GGGCGGcCGCCUUg -3'
miRNA:   3'- cGCCUauaUGACUgCCCGUC-GUGGAG- -5'
29062 3' -54.2 NC_006146.1 + 168218 0.68 0.911447
Target:  5'- uGgGGAUGgccgGCggGAgGGGcCGGCGCCUg -3'
miRNA:   3'- -CgCCUAUa---UGa-CUgCCC-GUCGUGGAg -5'
29062 3' -54.2 NC_006146.1 + 142444 0.68 0.911447
Target:  5'- cUGGGgg-ACUGA-GGGCGGcCGCCUUg -3'
miRNA:   3'- cGCCUauaUGACUgCCCGUC-GUGGAG- -5'
29062 3' -54.2 NC_006146.1 + 12804 0.68 0.911447
Target:  5'- gGCGGAcGUACgGACGG-CGGCugC-Cg -3'
miRNA:   3'- -CGCCUaUAUGaCUGCCcGUCGugGaG- -5'
29062 3' -54.2 NC_006146.1 + 154755 0.68 0.911447
Target:  5'- cUGGGgg-ACUGA-GGGCGGcCGCCUUg -3'
miRNA:   3'- cGCCUauaUGACUgCCCGUC-GUGGAG- -5'
29062 3' -54.2 NC_006146.1 + 167286 0.68 0.911447
Target:  5'- uGgGGAUGgccgGCggGAgGGGcCGGCGCCUg -3'
miRNA:   3'- -CgCCUAUa---UGa-CUgCCC-GUCGUGGAg -5'
29062 3' -54.2 NC_006146.1 + 169150 0.68 0.911447
Target:  5'- uGgGGAUGgccgGCggGAgGGGcCGGCGCCUg -3'
miRNA:   3'- -CgCCUAUa---UGa-CUgCCC-GUCGUGGAg -5'
29062 3' -54.2 NC_006146.1 + 102498 0.68 0.911447
Target:  5'- cGCGGAUG-ACaGAguCaGGCAGCACCa- -3'
miRNA:   3'- -CGCCUAUaUGaCU--GcCCGUCGUGGag -5'
29062 3' -54.2 NC_006146.1 + 148600 0.68 0.911447
Target:  5'- cUGGGgg-ACUGA-GGGCGGcCGCCUUg -3'
miRNA:   3'- cGCCUauaUGACUgCCCGUC-GUGGAG- -5'
29062 3' -54.2 NC_006146.1 + 157833 0.68 0.911447
Target:  5'- cUGGGgg-ACUGA-GGGCGGcCGCCUUg -3'
miRNA:   3'- cGCCUauaUGACUgCCCGUC-GUGGAG- -5'
29062 3' -54.2 NC_006146.1 + 157614 0.69 0.885464
Target:  5'- uGgGGGUAgucGCgGGCGGGCAcCGCCUg -3'
miRNA:   3'- -CgCCUAUa--UGaCUGCCCGUcGUGGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.