miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29062 3' -54.2 NC_006146.1 + 4498 0.67 0.928423
Target:  5'- uGUGGAgauggcACUGGCGGGcCAGCggggggugaccAUCUCg -3'
miRNA:   3'- -CGCCUaua---UGACUGCCC-GUCG-----------UGGAG- -5'
29062 3' -54.2 NC_006146.1 + 9292 0.67 0.943216
Target:  5'- uUGGAUAgcacaUACUGccggcCGGGCAGCAUUUg -3'
miRNA:   3'- cGCCUAU-----AUGACu----GCCCGUCGUGGAg -5'
29062 3' -54.2 NC_006146.1 + 10285 0.7 0.831455
Target:  5'- cGCGGA---GCUGGCaugccaGGCGGCcgACCUCg -3'
miRNA:   3'- -CGCCUauaUGACUGc-----CCGUCG--UGGAG- -5'
29062 3' -54.2 NC_006146.1 + 12804 0.68 0.911447
Target:  5'- gGCGGAcGUACgGACGG-CGGCugC-Cg -3'
miRNA:   3'- -CGCCUaUAUGaCUGCCcGUCGugGaG- -5'
29062 3' -54.2 NC_006146.1 + 13764 0.66 0.946795
Target:  5'- cGUGGAcgccaugGGCGaGGCGuGCGCCUCg -3'
miRNA:   3'- -CGCCUauauga-CUGC-CCGU-CGUGGAG- -5'
29062 3' -54.2 NC_006146.1 + 21175 0.74 0.607033
Target:  5'- cGUGGggGUGCUGACGGaCGGCaagACCUUg -3'
miRNA:   3'- -CGCCuaUAUGACUGCCcGUCG---UGGAG- -5'
29062 3' -54.2 NC_006146.1 + 23413 0.68 0.917348
Target:  5'- cGCuGGAccUGCcgGAgGGGCAGUACCa- -3'
miRNA:   3'- -CG-CCUauAUGa-CUgCCCGUCGUGGag -5'
29062 3' -54.2 NC_006146.1 + 39518 0.66 0.963132
Target:  5'- uGUGGGUG-GCUGAUGGGCugggggaggcGGCGCa-- -3'
miRNA:   3'- -CGCCUAUaUGACUGCCCG----------UCGUGgag -5'
29062 3' -54.2 NC_006146.1 + 40569 0.69 0.876222
Target:  5'- uGCGGGggacGCUGAugagguccuggcccUGGGCGGCcgaACCUCc -3'
miRNA:   3'- -CGCCUaua-UGACU--------------GCCCGUCG---UGGAG- -5'
29062 3' -54.2 NC_006146.1 + 44197 0.67 0.933597
Target:  5'- cGCGGcUGcACUGcagccGgGGGCGGUGCCUUg -3'
miRNA:   3'- -CGCCuAUaUGAC-----UgCCCGUCGUGGAG- -5'
29062 3' -54.2 NC_006146.1 + 44387 0.66 0.959243
Target:  5'- cCGGGgg-GCgUGugGGGCcgggcacGGCGCCUUc -3'
miRNA:   3'- cGCCUauaUG-ACugCCCG-------UCGUGGAG- -5'
29062 3' -54.2 NC_006146.1 + 46780 0.67 0.928423
Target:  5'- gGCGGAUG-GCUGGCcGGCcGGCgcgagggcaaagGCCUCu -3'
miRNA:   3'- -CGCCUAUaUGACUGcCCG-UCG------------UGGAG- -5'
29062 3' -54.2 NC_006146.1 + 48321 0.7 0.83978
Target:  5'- uCGGAgGUGCUGGCGGuGguGgGCCa- -3'
miRNA:   3'- cGCCUaUAUGACUGCC-CguCgUGGag -5'
29062 3' -54.2 NC_006146.1 + 48632 0.67 0.943216
Target:  5'- cGUGGGggcggGCUccgGGCGGGUgcccAGCGCCUUc -3'
miRNA:   3'- -CGCCUaua--UGA---CUGCCCG----UCGUGGAG- -5'
29062 3' -54.2 NC_006146.1 + 56599 0.69 0.871091
Target:  5'- uGCGGAUAUGCuUGAgGuGcGCAuGCAUCUUg -3'
miRNA:   3'- -CGCCUAUAUG-ACUgC-C-CGU-CGUGGAG- -5'
29062 3' -54.2 NC_006146.1 + 56803 0.76 0.506171
Target:  5'- gGCGGccGU-CUGGCGGGCGGgGCUUCu -3'
miRNA:   3'- -CGCCuaUAuGACUGCCCGUCgUGGAG- -5'
29062 3' -54.2 NC_006146.1 + 62455 0.67 0.943216
Target:  5'- aGUGGAccuugGUACgGACGGGCAcugcgucCACCUg -3'
miRNA:   3'- -CGCCUa----UAUGaCUGCCCGUc------GUGGAg -5'
29062 3' -54.2 NC_006146.1 + 65188 0.67 0.933597
Target:  5'- uGCGGAUGUgugugACUGGCaGGGggaggaaaUAGCuCCUCc -3'
miRNA:   3'- -CGCCUAUA-----UGACUG-CCC--------GUCGuGGAG- -5'
29062 3' -54.2 NC_006146.1 + 67933 0.71 0.78723
Target:  5'- cGUGGA-GUAUgucccgGAUGGGCGGCugcCCUCg -3'
miRNA:   3'- -CGCCUaUAUGa-----CUGCCCGUCGu--GGAG- -5'
29062 3' -54.2 NC_006146.1 + 71250 0.69 0.885464
Target:  5'- cUGGGgc--CUGGCGGGgGGCgGCCUCu -3'
miRNA:   3'- cGCCUauauGACUGCCCgUCG-UGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.