miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29062 3' -54.2 NC_006146.1 + 96892 1.11 0.003319
Target:  5'- cGCGGAUAUACUGACGGGCAGCACCUCc -3'
miRNA:   3'- -CGCCUAUAUGACUGCCCGUCGUGGAG- -5'
29062 3' -54.2 NC_006146.1 + 44197 0.67 0.933597
Target:  5'- cGCGGcUGcACUGcagccGgGGGCGGUGCCUUg -3'
miRNA:   3'- -CGCCuAUaUGAC-----UgCCCGUCGUGGAG- -5'
29062 3' -54.2 NC_006146.1 + 151402 0.67 0.943216
Target:  5'- gGCGGGgga--UGGCGcGGCGGCAgCUg -3'
miRNA:   3'- -CGCCUauaugACUGC-CCGUCGUgGAg -5'
29062 3' -54.2 NC_006146.1 + 95521 0.66 0.966436
Target:  5'- -gGGA---GCUGuCGGGUgcGGCGCCUg -3'
miRNA:   3'- cgCCUauaUGACuGCCCG--UCGUGGAg -5'
29062 3' -54.2 NC_006146.1 + 102053 0.71 0.796394
Target:  5'- aGUGGGuUGUugUGugGGGgcaAGCACCa- -3'
miRNA:   3'- -CGCCU-AUAugACugCCCg--UCGUGGag -5'
29062 3' -54.2 NC_006146.1 + 100286 0.7 0.814261
Target:  5'- aGCGGGg--GCUGGCaGGCcuGCACCg- -3'
miRNA:   3'- -CGCCUauaUGACUGcCCGu-CGUGGag -5'
29062 3' -54.2 NC_006146.1 + 48321 0.7 0.83978
Target:  5'- uCGGAgGUGCUGGCGGuGguGgGCCa- -3'
miRNA:   3'- cGCCUaUAUGACUGCC-CguCgUGGag -5'
29062 3' -54.2 NC_006146.1 + 138864 0.69 0.878389
Target:  5'- cCGGGUca--UGACcuGGGcCAGCGCCUCg -3'
miRNA:   3'- cGCCUAuaugACUG--CCC-GUCGUGGAG- -5'
29062 3' -54.2 NC_006146.1 + 168218 0.68 0.911447
Target:  5'- uGgGGAUGgccgGCggGAgGGGcCGGCGCCUg -3'
miRNA:   3'- -CgCCUAUa---UGa-CUgCCC-GUCGUGGAg -5'
29062 3' -54.2 NC_006146.1 + 46780 0.67 0.928423
Target:  5'- gGCGGAUG-GCUGGCcGGCcGGCgcgagggcaaagGCCUCu -3'
miRNA:   3'- -CGCCUAUaUGACUGcCCG-UCG------------UGGAG- -5'
29062 3' -54.2 NC_006146.1 + 102498 0.68 0.911447
Target:  5'- cGCGGAUG-ACaGAguCaGGCAGCACCa- -3'
miRNA:   3'- -CGCCUAUaUGaCU--GcCCGUCGUGGag -5'
29062 3' -54.2 NC_006146.1 + 167286 0.68 0.911447
Target:  5'- uGgGGAUGgccgGCggGAgGGGcCGGCGCCUg -3'
miRNA:   3'- -CgCCUAUa---UGa-CUgCCC-GUCGUGGAg -5'
29062 3' -54.2 NC_006146.1 + 56803 0.76 0.506171
Target:  5'- gGCGGccGU-CUGGCGGGCGGgGCUUCu -3'
miRNA:   3'- -CGCCuaUAuGACUGCCCGUCgUGGAG- -5'
29062 3' -54.2 NC_006146.1 + 101255 0.68 0.917348
Target:  5'- gGUGGGggacaugGUGCUGG-GGGCAGUcaACCUg -3'
miRNA:   3'- -CGCCUa------UAUGACUgCCCGUCG--UGGAg -5'
29062 3' -54.2 NC_006146.1 + 111034 0.75 0.555942
Target:  5'- aCGGA---GCUGAUGGGCGaCACCUCc -3'
miRNA:   3'- cGCCUauaUGACUGCCCGUcGUGGAG- -5'
29062 3' -54.2 NC_006146.1 + 157614 0.69 0.885464
Target:  5'- uGgGGGUAgucGCgGGCGGGCAcCGCCUg -3'
miRNA:   3'- -CgCCUAUa--UGaCUGCCCGUcGUGGAg -5'
29062 3' -54.2 NC_006146.1 + 4498 0.67 0.928423
Target:  5'- uGUGGAgauggcACUGGCGGGcCAGCggggggugaccAUCUCg -3'
miRNA:   3'- -CGCCUaua---UGACUGCCC-GUCG-----------UGGAG- -5'
29062 3' -54.2 NC_006146.1 + 9292 0.67 0.943216
Target:  5'- uUGGAUAgcacaUACUGccggcCGGGCAGCAUUUg -3'
miRNA:   3'- cGCCUAU-----AUGACu----GCCCGUCGUGGAg -5'
29062 3' -54.2 NC_006146.1 + 120692 0.75 0.576264
Target:  5'- cGCGGGUGcACgGGCGGacgcuggaGCAGCACCUg -3'
miRNA:   3'- -CGCCUAUaUGaCUGCC--------CGUCGUGGAg -5'
29062 3' -54.2 NC_006146.1 + 156246 0.7 0.822946
Target:  5'- cGUGGAcgggGUGCcgugGuuGGGCAGCACCa- -3'
miRNA:   3'- -CGCCUa---UAUGa---CugCCCGUCGUGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.