miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29062 5' -52.1 NC_006146.1 + 93938 0.66 0.991826
Target:  5'- gCGGcGggGC---UCcGCUCUCCGUCCc -3'
miRNA:   3'- aGCU-CuuCGacaAGuUGAGGGGCAGG- -5'
29062 5' -52.1 NC_006146.1 + 106162 0.66 0.99066
Target:  5'- cUCGAGAAGUcauagUCA--UCCCCGgCCu -3'
miRNA:   3'- -AGCUCUUCGaca--AGUugAGGGGCaGG- -5'
29062 5' -52.1 NC_006146.1 + 34093 0.66 0.988813
Target:  5'- cCGGGggGCagccgcgaccCAGCgcgCCCCGUUCa -3'
miRNA:   3'- aGCUCuuCGacaa------GUUGa--GGGGCAGG- -5'
29062 5' -52.1 NC_006146.1 + 157492 0.66 0.987939
Target:  5'- cCGGGGAGgcaccCUGagguGCUCCuCCGUCCu -3'
miRNA:   3'- aGCUCUUC-----GACaaguUGAGG-GGCAGG- -5'
29062 5' -52.1 NC_006146.1 + 117892 0.66 0.987939
Target:  5'- ---cGAGGCUGgucaUCGAC-CCCCGcggCCa -3'
miRNA:   3'- agcuCUUCGACa---AGUUGaGGGGCa--GG- -5'
29062 5' -52.1 NC_006146.1 + 109447 0.66 0.987939
Target:  5'- -aGAGAcagguaguagAGCUGg--AGCUCCCCcacgaGUCCa -3'
miRNA:   3'- agCUCU----------UCGACaagUUGAGGGG-----CAGG- -5'
29062 5' -52.1 NC_006146.1 + 57139 0.66 0.987939
Target:  5'- uUCGGGggGCUGguggcCGAC-CgCCGcuUCCa -3'
miRNA:   3'- -AGCUCuuCGACaa---GUUGaGgGGC--AGG- -5'
29062 5' -52.1 NC_006146.1 + 145180 0.66 0.987939
Target:  5'- cCGGGGAGgcaccCUGagguGCUCCuCCGUCCu -3'
miRNA:   3'- aGCUCUUC-----GACaaguUGAGG-GGCAGG- -5'
29062 5' -52.1 NC_006146.1 + 154414 0.66 0.987939
Target:  5'- cCGGGGAGgcaccCUGagguGCUCCuCCGUCCu -3'
miRNA:   3'- aGCUCUUC-----GACaaguUGAGG-GGCAGG- -5'
29062 5' -52.1 NC_006146.1 + 151336 0.66 0.987939
Target:  5'- cCGGGGAGgcaccCUGagguGCUCCuCCGUCCu -3'
miRNA:   3'- aGCUCUUC-----GACaaguUGAGG-GGCAGG- -5'
29062 5' -52.1 NC_006146.1 + 103150 0.66 0.987939
Target:  5'- -gGGGGAGgUcUUUGGCUCCuCCGUCUg -3'
miRNA:   3'- agCUCUUCgAcAAGUUGAGG-GGCAGG- -5'
29062 5' -52.1 NC_006146.1 + 148258 0.66 0.987939
Target:  5'- cCGGGGAGgcaccCUGagguGCUCCuCCGUCCu -3'
miRNA:   3'- aGCUCUUC-----GACaaguUGAGG-GGCAGG- -5'
29062 5' -52.1 NC_006146.1 + 142102 0.66 0.987939
Target:  5'- cCGGGGAGgcaccCUGagguGCUCCuCCGUCCu -3'
miRNA:   3'- aGCUCUUC-----GACaaguUGAGG-GGCAGG- -5'
29062 5' -52.1 NC_006146.1 + 72989 0.66 0.986367
Target:  5'- cCGAGggGgCUcgccUCAGCUCCuuGUgCa -3'
miRNA:   3'- aGCUCuuC-GAca--AGUUGAGGggCAgG- -5'
29062 5' -52.1 NC_006146.1 + 61570 0.67 0.984642
Target:  5'- --aAGGAGCUGUUUGGCUCggCCGUgCa -3'
miRNA:   3'- agcUCUUCGACAAGUUGAGg-GGCAgG- -5'
29062 5' -52.1 NC_006146.1 + 88706 0.67 0.9807
Target:  5'- cUUGGGAcuGUUGUggcugCGGCUCCCUGuaaUCCa -3'
miRNA:   3'- -AGCUCUu-CGACAa----GUUGAGGGGC---AGG- -5'
29062 5' -52.1 NC_006146.1 + 88600 0.67 0.978232
Target:  5'- ---uGggGCUGUUguggcugCGACUCCCUGUaucCCa -3'
miRNA:   3'- agcuCuuCGACAA-------GUUGAGGGGCA---GG- -5'
29062 5' -52.1 NC_006146.1 + 114614 0.68 0.973162
Target:  5'- cUCGAGGcggcGCUGgaCGuccuggccuccucGCUCCCCG-CCg -3'
miRNA:   3'- -AGCUCUu---CGACaaGU-------------UGAGGGGCaGG- -5'
29062 5' -52.1 NC_006146.1 + 113101 0.68 0.970621
Target:  5'- gUGAGGAGCUcg-C-GCUCCCCGggggaugCCa -3'
miRNA:   3'- aGCUCUUCGAcaaGuUGAGGGGCa------GG- -5'
29062 5' -52.1 NC_006146.1 + 59725 0.68 0.970621
Target:  5'- gUCGGGggGCgcaucucUCGcCUCCCCGagcgCCu -3'
miRNA:   3'- -AGCUCuuCGaca----AGUuGAGGGGCa---GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.