Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29062 | 5' | -52.1 | NC_006146.1 | + | 157492 | 0.66 | 0.987939 |
Target: 5'- cCGGGGAGgcaccCUGagguGCUCCuCCGUCCu -3' miRNA: 3'- aGCUCUUC-----GACaaguUGAGG-GGCAGG- -5' |
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29062 | 5' | -52.1 | NC_006146.1 | + | 93938 | 0.66 | 0.991826 |
Target: 5'- gCGGcGggGC---UCcGCUCUCCGUCCc -3' miRNA: 3'- aGCU-CuuCGacaAGuUGAGGGGCAGG- -5' |
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29062 | 5' | -52.1 | NC_006146.1 | + | 109447 | 0.66 | 0.987939 |
Target: 5'- -aGAGAcagguaguagAGCUGg--AGCUCCCCcacgaGUCCa -3' miRNA: 3'- agCUCU----------UCGACaagUUGAGGGG-----CAGG- -5' |
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29062 | 5' | -52.1 | NC_006146.1 | + | 106162 | 0.66 | 0.99066 |
Target: 5'- cUCGAGAAGUcauagUCA--UCCCCGgCCu -3' miRNA: 3'- -AGCUCUUCGaca--AGUugAGGGGCaGG- -5' |
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29062 | 5' | -52.1 | NC_006146.1 | + | 117892 | 0.66 | 0.987939 |
Target: 5'- ---cGAGGCUGgucaUCGAC-CCCCGcggCCa -3' miRNA: 3'- agcuCUUCGACa---AGUUGaGGGGCa--GG- -5' |
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29062 | 5' | -52.1 | NC_006146.1 | + | 57139 | 0.66 | 0.987939 |
Target: 5'- uUCGGGggGCUGguggcCGAC-CgCCGcuUCCa -3' miRNA: 3'- -AGCUCuuCGACaa---GUUGaGgGGC--AGG- -5' |
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29062 | 5' | -52.1 | NC_006146.1 | + | 34093 | 0.66 | 0.988813 |
Target: 5'- cCGGGggGCagccgcgaccCAGCgcgCCCCGUUCa -3' miRNA: 3'- aGCUCuuCGacaa------GUUGa--GGGGCAGG- -5' |
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29062 | 5' | -52.1 | NC_006146.1 | + | 72989 | 0.66 | 0.986367 |
Target: 5'- cCGAGggGgCUcgccUCAGCUCCuuGUgCa -3' miRNA: 3'- aGCUCuuC-GAca--AGUUGAGGggCAgG- -5' |
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29062 | 5' | -52.1 | NC_006146.1 | + | 142102 | 0.66 | 0.987939 |
Target: 5'- cCGGGGAGgcaccCUGagguGCUCCuCCGUCCu -3' miRNA: 3'- aGCUCUUC-----GACaaguUGAGG-GGCAGG- -5' |
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29062 | 5' | -52.1 | NC_006146.1 | + | 154414 | 0.66 | 0.987939 |
Target: 5'- cCGGGGAGgcaccCUGagguGCUCCuCCGUCCu -3' miRNA: 3'- aGCUCUUC-----GACaaguUGAGG-GGCAGG- -5' |
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29062 | 5' | -52.1 | NC_006146.1 | + | 103150 | 0.66 | 0.987939 |
Target: 5'- -gGGGGAGgUcUUUGGCUCCuCCGUCUg -3' miRNA: 3'- agCUCUUCgAcAAGUUGAGG-GGCAGG- -5' |
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29062 | 5' | -52.1 | NC_006146.1 | + | 151336 | 0.66 | 0.987939 |
Target: 5'- cCGGGGAGgcaccCUGagguGCUCCuCCGUCCu -3' miRNA: 3'- aGCUCUUC-----GACaaguUGAGG-GGCAGG- -5' |
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29062 | 5' | -52.1 | NC_006146.1 | + | 148258 | 0.66 | 0.987939 |
Target: 5'- cCGGGGAGgcaccCUGagguGCUCCuCCGUCCu -3' miRNA: 3'- aGCUCUUC-----GACaaguUGAGG-GGCAGG- -5' |
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29062 | 5' | -52.1 | NC_006146.1 | + | 145180 | 0.66 | 0.987939 |
Target: 5'- cCGGGGAGgcaccCUGagguGCUCCuCCGUCCu -3' miRNA: 3'- aGCUCUUC-----GACaaguUGAGG-GGCAGG- -5' |
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29062 | 5' | -52.1 | NC_006146.1 | + | 61570 | 0.67 | 0.984642 |
Target: 5'- --aAGGAGCUGUUUGGCUCggCCGUgCa -3' miRNA: 3'- agcUCUUCGACAAGUUGAGg-GGCAgG- -5' |
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29062 | 5' | -52.1 | NC_006146.1 | + | 88706 | 0.67 | 0.9807 |
Target: 5'- cUUGGGAcuGUUGUggcugCGGCUCCCUGuaaUCCa -3' miRNA: 3'- -AGCUCUu-CGACAa----GUUGAGGGGC---AGG- -5' |
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29062 | 5' | -52.1 | NC_006146.1 | + | 88600 | 0.67 | 0.978232 |
Target: 5'- ---uGggGCUGUUguggcugCGACUCCCUGUaucCCa -3' miRNA: 3'- agcuCuuCGACAA-------GUUGAGGGGCA---GG- -5' |
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29062 | 5' | -52.1 | NC_006146.1 | + | 102456 | 0.68 | 0.96127 |
Target: 5'- -gGGGAGGUagaaggccaucguucUGUUUAccccccauaggcgcGCUCCCCGUCUu -3' miRNA: 3'- agCUCUUCG---------------ACAAGU--------------UGAGGGGCAGG- -5' |
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29062 | 5' | -52.1 | NC_006146.1 | + | 73976 | 0.68 | 0.964367 |
Target: 5'- aCGGGGAGUUGaaCAGCUUCUCGaUCg -3' miRNA: 3'- aGCUCUUCGACaaGUUGAGGGGC-AGg -5' |
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29062 | 5' | -52.1 | NC_006146.1 | + | 113101 | 0.68 | 0.970621 |
Target: 5'- gUGAGGAGCUcg-C-GCUCCCCGggggaugCCa -3' miRNA: 3'- aGCUCUUCGAcaaGuUGAGGGGCa------GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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