miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29062 5' -52.1 NC_006146.1 + 96926 1.14 0.004001
Target:  5'- aUCGAGAAGCUGUUCAACUCCCCGUCCg -3'
miRNA:   3'- -AGCUCUUCGACAAGUUGAGGGGCAGG- -5'
29062 5' -52.1 NC_006146.1 + 117001 0.79 0.479126
Target:  5'- -gGAGAAGCUGUUCAcaaaagccaGCcgCCCCGcCCg -3'
miRNA:   3'- agCUCUUCGACAAGU---------UGa-GGGGCaGG- -5'
29062 5' -52.1 NC_006146.1 + 59867 0.74 0.751937
Target:  5'- -gGAGGAGgUGUcgccaUCAGCUccgugcuaaaggCCCCGUCCa -3'
miRNA:   3'- agCUCUUCgACA-----AGUUGA------------GGGGCAGG- -5'
29062 5' -52.1 NC_006146.1 + 156019 0.74 0.751938
Target:  5'- gUCGAGAagacgcuguAGUUGUcCAGCUCCCUGgcugCCc -3'
miRNA:   3'- -AGCUCU---------UCGACAaGUUGAGGGGCa---GG- -5'
29062 5' -52.1 NC_006146.1 + 71227 0.74 0.771166
Target:  5'- uUCGAGuccuGGCUGgUCAACUCCUgGggCCu -3'
miRNA:   3'- -AGCUCu---UCGACaAGUUGAGGGgCa-GG- -5'
29062 5' -52.1 NC_006146.1 + 146017 0.73 0.789888
Target:  5'- cCGAGggGCagggGggCAGCUCCUggcacugcgCGUCCa -3'
miRNA:   3'- aGCUCuuCGa---CaaGUUGAGGG---------GCAGG- -5'
29062 5' -52.1 NC_006146.1 + 112433 0.71 0.894492
Target:  5'- aUCaGGAGGCUGaUguGCUUgCCGUCCu -3'
miRNA:   3'- -AGcUCUUCGACaAguUGAGgGGCAGG- -5'
29062 5' -52.1 NC_006146.1 + 135703 0.71 0.894493
Target:  5'- cCGGGccGCUGccgggUCcGCUgCCCGUCCu -3'
miRNA:   3'- aGCUCuuCGACa----AGuUGAgGGGCAGG- -5'
29062 5' -52.1 NC_006146.1 + 89353 0.71 0.90105
Target:  5'- aCGAgGAGGCUGcaguggagUCcucgGACUCCCgGUCCc -3'
miRNA:   3'- aGCU-CUUCGACa-------AG----UUGAGGGgCAGG- -5'
29062 5' -52.1 NC_006146.1 + 155762 0.7 0.913449
Target:  5'- cCGAGGAGCUGU---AgaCCCCG-CCg -3'
miRNA:   3'- aGCUCUUCGACAaguUgaGGGGCaGG- -5'
29062 5' -52.1 NC_006146.1 + 123141 0.7 0.919285
Target:  5'- gCGAGAAGagg--CcGCUCUCCGUCCc -3'
miRNA:   3'- aGCUCUUCgacaaGuUGAGGGGCAGG- -5'
29062 5' -52.1 NC_006146.1 + 17338 0.7 0.924878
Target:  5'- cUGAcGGAGCUGaccacggCAGCUCCaCCGUUCc -3'
miRNA:   3'- aGCU-CUUCGACaa-----GUUGAGG-GGCAGG- -5'
29062 5' -52.1 NC_006146.1 + 18308 0.7 0.924878
Target:  5'- -gGGGggGCUGUUUAGCaaCCUgGUCUc -3'
miRNA:   3'- agCUCuuCGACAAGUUGa-GGGgCAGG- -5'
29062 5' -52.1 NC_006146.1 + 110419 0.7 0.928117
Target:  5'- -gGGGGAGCUGgccccccggccucUCAccGCUCCCCGcggCCu -3'
miRNA:   3'- agCUCUUCGACa------------AGU--UGAGGGGCa--GG- -5'
29062 5' -52.1 NC_006146.1 + 170003 0.69 0.949188
Target:  5'- cCGGGggGCggcGcgCGGCcuucCCCCGUCUg -3'
miRNA:   3'- aGCUCuuCGa--CaaGUUGa---GGGGCAGG- -5'
29062 5' -52.1 NC_006146.1 + 169071 0.69 0.949188
Target:  5'- cCGGGggGCggcGcgCGGCcuucCCCCGUCUg -3'
miRNA:   3'- aGCUCuuCGa--CaaGUUGa---GGGGCAGG- -5'
29062 5' -52.1 NC_006146.1 + 168139 0.69 0.949188
Target:  5'- cCGGGggGCggcGcgCGGCcuucCCCCGUCUg -3'
miRNA:   3'- aGCUCuuCGa--CaaGUUGa---GGGGCAGG- -5'
29062 5' -52.1 NC_006146.1 + 167207 0.69 0.949188
Target:  5'- cCGGGggGCggcGcgCGGCcuucCCCCGUCUg -3'
miRNA:   3'- aGCUCuuCGa--CaaGUUGa---GGGGCAGG- -5'
29062 5' -52.1 NC_006146.1 + 122971 0.68 0.960914
Target:  5'- gCGGGAGGCggggagGUgccaCAcaUCCCUGUCCu -3'
miRNA:   3'- aGCUCUUCGa-----CAa---GUugAGGGGCAGG- -5'
29062 5' -52.1 NC_006146.1 + 145194 0.68 0.960914
Target:  5'- cUUGAGggGCUGgccCGGCUUCCacUCCu -3'
miRNA:   3'- -AGCUCuuCGACaa-GUUGAGGGgcAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.