miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29063 3' -46.9 NC_006146.1 + 67389 0.66 0.999967
Target:  5'- aGG-GGGGCUCGguGCGGAUGUUc--- -3'
miRNA:   3'- -CCaCCUUGAGCauUGUCUACAGaugc -5'
29063 3' -46.9 NC_006146.1 + 71889 0.66 0.999967
Target:  5'- aGGUGGGGCUgGUGGCguuagGGGUGguggACa -3'
miRNA:   3'- -CCACCUUGAgCAUUG-----UCUACaga-UGc -5'
29063 3' -46.9 NC_006146.1 + 162071 0.66 0.999956
Target:  5'- gGGUGGGugaAUgucgCGUGGCGGAaGUCUuuuuccGCGg -3'
miRNA:   3'- -CCACCU---UGa---GCAUUGUCUaCAGA------UGC- -5'
29063 3' -46.9 NC_006146.1 + 14948 0.67 0.999829
Target:  5'- -cUGGAACUC-UGGCAGccAUG-CUACGg -3'
miRNA:   3'- ccACCUUGAGcAUUGUC--UACaGAUGC- -5'
29063 3' -46.9 NC_006146.1 + 5247 0.68 0.99978
Target:  5'- cGUGGGACUCGUGAUccucUGccUCUGCa -3'
miRNA:   3'- cCACCUUGAGCAUUGucu-AC--AGAUGc -5'
29063 3' -46.9 NC_006146.1 + 95309 0.68 0.99972
Target:  5'- cGGUGGGGCaguaGgcGCGGAggGUCUGgGa -3'
miRNA:   3'- -CCACCUUGag--CauUGUCUa-CAGAUgC- -5'
29063 3' -46.9 NC_006146.1 + 118775 0.68 0.999647
Target:  5'- uGGUGGGGCcCG-AGCuGGUGUCcagcgACGg -3'
miRNA:   3'- -CCACCUUGaGCaUUGuCUACAGa----UGC- -5'
29063 3' -46.9 NC_006146.1 + 61439 0.68 0.999647
Target:  5'- uGGUGG-ACUCGUGGgGGAgcuccagcUCUACu -3'
miRNA:   3'- -CCACCuUGAGCAUUgUCUac------AGAUGc -5'
29063 3' -46.9 NC_006146.1 + 91852 0.68 0.999556
Target:  5'- cGGUGGAAaaaa-GACAGGUGcCUGCa -3'
miRNA:   3'- -CCACCUUgagcaUUGUCUACaGAUGc -5'
29063 3' -46.9 NC_006146.1 + 115673 0.69 0.998964
Target:  5'- uGGUGGAGCU-GUAGCugagaccGGUGUCgAUGg -3'
miRNA:   3'- -CCACCUUGAgCAUUGu------CUACAGaUGC- -5'
29063 3' -46.9 NC_006146.1 + 71961 0.77 0.910423
Target:  5'- aGGUGGGGCUgGUGACauuaggGGAUGUCaUACc -3'
miRNA:   3'- -CCACCUUGAgCAUUG------UCUACAG-AUGc -5'
29063 3' -46.9 NC_006146.1 + 97200 1.13 0.018072
Target:  5'- cGGUGGAACUCGUAACAGAUGUCUACGc -3'
miRNA:   3'- -CCACCUUGAGCAUUGUCUACAGAUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.