miRNA display CGI


Results 1 - 20 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29065 3' -56.7 NC_006146.1 + 24706 0.66 0.915303
Target:  5'- -cCCGGAGGagcCCAUGCagCACUAgcgUCCa -3'
miRNA:   3'- ucGGCCUCCaa-GGUGCG--GUGGUa--AGG- -5'
29065 3' -56.7 NC_006146.1 + 102824 0.66 0.890582
Target:  5'- cGCgCGGGGGcUCUGCGCUugCucgcgCCg -3'
miRNA:   3'- uCG-GCCUCCaAGGUGCGGugGuaa--GG- -5'
29065 3' -56.7 NC_006146.1 + 61975 0.66 0.890582
Target:  5'- gGGCCGuuGAGGc-CCACGUCACCugcUCg -3'
miRNA:   3'- -UCGGC--CUCCaaGGUGCGGUGGua-AGg -5'
29065 3' -56.7 NC_006146.1 + 130305 0.66 0.915303
Target:  5'- cGGCaugCGGAGGUUCgGcCGCCcaggGCCAggaCCu -3'
miRNA:   3'- -UCG---GCCUCCAAGgU-GCGG----UGGUaa-GG- -5'
29065 3' -56.7 NC_006146.1 + 127630 0.66 0.890582
Target:  5'- uGCCGGAcc-UCCAgGCCGCCcugugCCu -3'
miRNA:   3'- uCGGCCUccaAGGUgCGGUGGuaa--GG- -5'
29065 3' -56.7 NC_006146.1 + 98523 0.66 0.895814
Target:  5'- gGGCCccacccgacucGGGUUUCGuCGCCGCCAgccggUCCa -3'
miRNA:   3'- -UCGGcc---------UCCAAGGU-GCGGUGGUa----AGG- -5'
29065 3' -56.7 NC_006146.1 + 106703 0.66 0.897101
Target:  5'- uGCCGGAGc-UCCGCGaCACCuugcaacUCCu -3'
miRNA:   3'- uCGGCCUCcaAGGUGCgGUGGua-----AGG- -5'
29065 3' -56.7 NC_006146.1 + 127252 0.66 0.903395
Target:  5'- gAGCCGGgccccucuccccAGGcggCCACGCCccGCCGcccacucccucUUCCc -3'
miRNA:   3'- -UCGGCC------------UCCaa-GGUGCGG--UGGU-----------AAGG- -5'
29065 3' -56.7 NC_006146.1 + 137600 0.66 0.903395
Target:  5'- gGGCCGGGGG--CCGggUGCC-CCugggUCCg -3'
miRNA:   3'- -UCGGCCUCCaaGGU--GCGGuGGua--AGG- -5'
29065 3' -56.7 NC_006146.1 + 168257 0.66 0.890582
Target:  5'- gGGCUGGAuGGUcCC-CGCCguguggacgaaGCCGUgcUCCa -3'
miRNA:   3'- -UCGGCCU-CCAaGGuGCGG-----------UGGUA--AGG- -5'
29065 3' -56.7 NC_006146.1 + 113509 0.66 0.890582
Target:  5'- cGGCCGGGcacggucgcGGggCCagcccaccgGCGCCACCg--CCg -3'
miRNA:   3'- -UCGGCCU---------CCaaGG---------UGCGGUGGuaaGG- -5'
29065 3' -56.7 NC_006146.1 + 11535 0.66 0.897101
Target:  5'- gAGCUGGcGGUcagCUACGCCcccGCCAUgCUg -3'
miRNA:   3'- -UCGGCCuCCAa--GGUGCGG---UGGUAaGG- -5'
29065 3' -56.7 NC_006146.1 + 110256 0.66 0.915303
Target:  5'- aAGCCaGGAGa-UCUugGCCugCAgagCCc -3'
miRNA:   3'- -UCGG-CCUCcaAGGugCGGugGUaa-GG- -5'
29065 3' -56.7 NC_006146.1 + 14680 0.66 0.915303
Target:  5'- cGGCCGaGGGGgcCCGCGucuccugcaaCCACCuggcggUCCc -3'
miRNA:   3'- -UCGGC-CUCCaaGGUGC----------GGUGGua----AGG- -5'
29065 3' -56.7 NC_006146.1 + 15025 0.66 0.914729
Target:  5'- uGCCagGGAGGggcgCCugGCCagggcccGCCGggCCu -3'
miRNA:   3'- uCGG--CCUCCaa--GGugCGG-------UGGUaaGG- -5'
29065 3' -56.7 NC_006146.1 + 41771 0.66 0.909463
Target:  5'- cGCCGGAGGccCUGCGCC-CgGgcgCCc -3'
miRNA:   3'- uCGGCCUCCaaGGUGCGGuGgUaa-GG- -5'
29065 3' -56.7 NC_006146.1 + 33246 0.66 0.909463
Target:  5'- -uCCGGGGGUgggggcUCCACGaacCCGCUugccUUCCa -3'
miRNA:   3'- ucGGCCUCCA------AGGUGC---GGUGGu---AAGG- -5'
29065 3' -56.7 NC_006146.1 + 127382 0.66 0.90585
Target:  5'- cGCCccucguGGAGGUgucuuggggcugggCCcCGCCGCCGgagCCg -3'
miRNA:   3'- uCGG------CCUCCAa-------------GGuGCGGUGGUaa-GG- -5'
29065 3' -56.7 NC_006146.1 + 72031 0.66 0.89774
Target:  5'- gAGUgGGuGGUgacucggcgcaggcaCCcCGCCGCCAUUCUu -3'
miRNA:   3'- -UCGgCCuCCAa--------------GGuGCGGUGGUAAGG- -5'
29065 3' -56.7 NC_006146.1 + 47396 0.66 0.897101
Target:  5'- gGGuuGGAGcg-UCugGCCGCCAUgCUg -3'
miRNA:   3'- -UCggCCUCcaaGGugCGGUGGUAaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.