miRNA display CGI


Results 1 - 20 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29065 3' -56.7 NC_006146.1 + 98814 1.12 0.00184
Target:  5'- uAGCCGGAGGUUCCACGCCACCAUUCCa -3'
miRNA:   3'- -UCGGCCUCCAAGGUGCGGUGGUAAGG- -5'
29065 3' -56.7 NC_006146.1 + 62853 0.77 0.363698
Target:  5'- aGGCCGGAGGUUCU-CuuCACCAgUCCg -3'
miRNA:   3'- -UCGGCCUCCAAGGuGcgGUGGUaAGG- -5'
29065 3' -56.7 NC_006146.1 + 126191 0.75 0.421658
Target:  5'- aGGCCGGccagcGGGggCCACgGCCACCGccgCCa -3'
miRNA:   3'- -UCGGCC-----UCCaaGGUG-CGGUGGUaa-GG- -5'
29065 3' -56.7 NC_006146.1 + 48248 0.75 0.430382
Target:  5'- cGCgCGGAGGgcCCcCGCCGCCG-UCCu -3'
miRNA:   3'- uCG-GCCUCCaaGGuGCGGUGGUaAGG- -5'
29065 3' -56.7 NC_006146.1 + 137913 0.75 0.454456
Target:  5'- gGGCCGGGGGUUCCGggggcaGCCGcgacccagcgcgccCCGUUCa -3'
miRNA:   3'- -UCGGCCUCCAAGGUg-----CGGU--------------GGUAAGg -5'
29065 3' -56.7 NC_006146.1 + 5076 0.74 0.466304
Target:  5'- cGuuGGAGGcgUCCACGCgGCCAgggacgCCc -3'
miRNA:   3'- uCggCCUCCa-AGGUGCGgUGGUaa----GG- -5'
29065 3' -56.7 NC_006146.1 + 123616 0.74 0.484838
Target:  5'- cAGCCagcGGAGG-UCCACGCaGCCGUcgCCg -3'
miRNA:   3'- -UCGG---CCUCCaAGGUGCGgUGGUAa-GG- -5'
29065 3' -56.7 NC_006146.1 + 55706 0.73 0.522906
Target:  5'- cGCCGGGGGgcucugCC-CGCCGCUGgccUCCg -3'
miRNA:   3'- uCGGCCUCCaa----GGuGCGGUGGUa--AGG- -5'
29065 3' -56.7 NC_006146.1 + 128193 0.73 0.522906
Target:  5'- cGGCCcagGGGGGcgCCGCGgCGCCGggCCa -3'
miRNA:   3'- -UCGG---CCUCCaaGGUGCgGUGGUaaGG- -5'
29065 3' -56.7 NC_006146.1 + 51837 0.73 0.552195
Target:  5'- cGCCGGAGGUgggCUGCGgUugCAggCCa -3'
miRNA:   3'- uCGGCCUCCAa--GGUGCgGugGUaaGG- -5'
29065 3' -56.7 NC_006146.1 + 169160 0.73 0.552195
Target:  5'- cGGCgGGAGGggCCgGCGCCugCAgggggggCCg -3'
miRNA:   3'- -UCGgCCUCCaaGG-UGCGGugGUaa-----GG- -5'
29065 3' -56.7 NC_006146.1 + 167296 0.73 0.552195
Target:  5'- cGGCgGGAGGggCCgGCGCCugCAgggggggCCg -3'
miRNA:   3'- -UCGgCCUCCaaGG-UGCGGugGUaa-----GG- -5'
29065 3' -56.7 NC_006146.1 + 168228 0.73 0.552195
Target:  5'- cGGCgGGAGGggCCgGCGCCugCAgggggggCCg -3'
miRNA:   3'- -UCGgCCUCCaaGG-UGCGGugGUaa-----GG- -5'
29065 3' -56.7 NC_006146.1 + 11178 0.73 0.571994
Target:  5'- cGCCucuacgGGGGGaaCCugGUgGCCAUUCCa -3'
miRNA:   3'- uCGG------CCUCCaaGGugCGgUGGUAAGG- -5'
29065 3' -56.7 NC_006146.1 + 138472 0.73 0.571994
Target:  5'- -cCUGGAGGUaUCCuaACGCCGCCccuauAUUCCa -3'
miRNA:   3'- ucGGCCUCCA-AGG--UGCGGUGG-----UAAGG- -5'
29065 3' -56.7 NC_006146.1 + 49547 0.73 0.571994
Target:  5'- gGGgCGGAGG--CCACGCCgGCCAggCCc -3'
miRNA:   3'- -UCgGCCUCCaaGGUGCGG-UGGUaaGG- -5'
29065 3' -56.7 NC_006146.1 + 113503 0.72 0.591958
Target:  5'- -uCCaGGAGGgggCCAUgGCCGCCAUUCUa -3'
miRNA:   3'- ucGG-CCUCCaa-GGUG-CGGUGGUAAGG- -5'
29065 3' -56.7 NC_006146.1 + 15833 0.72 0.601986
Target:  5'- aGGCCcGAGGUUggagCCggcggGCGCCACCAggUCCc -3'
miRNA:   3'- -UCGGcCUCCAA----GG-----UGCGGUGGUa-AGG- -5'
29065 3' -56.7 NC_006146.1 + 18911 0.72 0.601986
Target:  5'- aGGCCcGAGGUUggagCCggcggGCGCCACCAggUCCc -3'
miRNA:   3'- -UCGGcCUCCAA----GG-----UGCGGUGGUa-AGG- -5'
29065 3' -56.7 NC_006146.1 + 12754 0.72 0.601986
Target:  5'- aGGCCcGAGGUUggagCCggcggGCGCCACCAggUCCc -3'
miRNA:   3'- -UCGGcCUCCAA----GG-----UGCGGUGGUa-AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.