miRNA display CGI


Results 1 - 20 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29065 3' -56.7 NC_006146.1 + 586 0.69 0.769464
Target:  5'- gGGCCGGGGGcgcggCC-CGgCGCCAgcCCu -3'
miRNA:   3'- -UCGGCCUCCaa---GGuGCgGUGGUaaGG- -5'
29065 3' -56.7 NC_006146.1 + 1227 0.69 0.78774
Target:  5'- -cCCGGGGGcgggCCACGCgCGCCcg-CCa -3'
miRNA:   3'- ucGGCCUCCaa--GGUGCG-GUGGuaaGG- -5'
29065 3' -56.7 NC_006146.1 + 1517 0.69 0.769464
Target:  5'- gGGCCGGGGGcgcggCC-CGgCGCCAgcCCu -3'
miRNA:   3'- -UCGGCCUCCaa---GGuGCgGUGGUaaGG- -5'
29065 3' -56.7 NC_006146.1 + 2159 0.69 0.78774
Target:  5'- -cCCGGGGGcgggCCACGCgCGCCcg-CCa -3'
miRNA:   3'- ucGGCCUCCaa--GGUGCG-GUGGuaaGG- -5'
29065 3' -56.7 NC_006146.1 + 2449 0.69 0.769464
Target:  5'- gGGCCGGGGGcgcggCC-CGgCGCCAgcCCu -3'
miRNA:   3'- -UCGGCCUCCaa---GGuGCgGUGGUaaGG- -5'
29065 3' -56.7 NC_006146.1 + 3091 0.69 0.78774
Target:  5'- -cCCGGGGGcgggCCACGCgCGCCcg-CCa -3'
miRNA:   3'- ucGGCCUCCaa--GGUGCG-GUGGuaaGG- -5'
29065 3' -56.7 NC_006146.1 + 3381 0.69 0.769464
Target:  5'- gGGCCGGGGGcgcggCC-CGgCGCCAgcCCu -3'
miRNA:   3'- -UCGGCCUCCaa---GGuGCgGUGGUaaGG- -5'
29065 3' -56.7 NC_006146.1 + 5076 0.74 0.466304
Target:  5'- cGuuGGAGGcgUCCACGCgGCCAgggacgCCc -3'
miRNA:   3'- uCggCCUCCa-AGGUGCGgUGGUaa----GG- -5'
29065 3' -56.7 NC_006146.1 + 11178 0.73 0.571994
Target:  5'- cGCCucuacgGGGGGaaCCugGUgGCCAUUCCa -3'
miRNA:   3'- uCGG------CCUCCaaGGugCGgUGGUAAGG- -5'
29065 3' -56.7 NC_006146.1 + 11535 0.66 0.897101
Target:  5'- gAGCUGGcGGUcagCUACGCCcccGCCAUgCUg -3'
miRNA:   3'- -UCGGCCuCCAa--GGUGCGG---UGGUAaGG- -5'
29065 3' -56.7 NC_006146.1 + 12754 0.72 0.601986
Target:  5'- aGGCCcGAGGUUggagCCggcggGCGCCACCAggUCCc -3'
miRNA:   3'- -UCGGcCUCCAA----GG-----UGCGGUGGUa-AGG- -5'
29065 3' -56.7 NC_006146.1 + 13445 0.66 0.90585
Target:  5'- cAGCCGGAGGgaCCccgGCaGCCcggguggccccagagGCCAaagUCCu -3'
miRNA:   3'- -UCGGCCUCCaaGG---UG-CGG---------------UGGUa--AGG- -5'
29065 3' -56.7 NC_006146.1 + 13733 0.66 0.907667
Target:  5'- cGGCCGGAGGgaCCcCggcagcccgggagaGCCGCCuuaCCu -3'
miRNA:   3'- -UCGGCCUCCaaGGuG--------------CGGUGGuaaGG- -5'
29065 3' -56.7 NC_006146.1 + 13847 0.69 0.778666
Target:  5'- cGGCCGGAGGgaCCccgGCGgCCcgguguGCCAgcgUCCc -3'
miRNA:   3'- -UCGGCCUCCaaGG---UGC-GG------UGGUa--AGG- -5'
29065 3' -56.7 NC_006146.1 + 14679 0.71 0.672378
Target:  5'- gGGCCcaGGGGGgUUCGCGUUGCCAggCCa -3'
miRNA:   3'- -UCGG--CCUCCaAGGUGCGGUGGUaaGG- -5'
29065 3' -56.7 NC_006146.1 + 14680 0.66 0.915303
Target:  5'- cGGCCGaGGGGgcCCGCGucuccugcaaCCACCuggcggUCCc -3'
miRNA:   3'- -UCGGC-CUCCaaGGUGC----------GGUGGua----AGG- -5'
29065 3' -56.7 NC_006146.1 + 15025 0.66 0.914729
Target:  5'- uGCCagGGAGGggcgCCugGCCagggcccGCCGggCCu -3'
miRNA:   3'- uCGG--CCUCCaa--GGugCGG-------UGGUaaGG- -5'
29065 3' -56.7 NC_006146.1 + 15833 0.72 0.601986
Target:  5'- aGGCCcGAGGUUggagCCggcggGCGCCACCAggUCCc -3'
miRNA:   3'- -UCGGcCUCCAA----GG-----UGCGGUGGUa-AGG- -5'
29065 3' -56.7 NC_006146.1 + 15885 0.67 0.854779
Target:  5'- uGCCGGAGGgcUCgCugGCCucgaGCCAgcaacUUCUg -3'
miRNA:   3'- uCGGCCUCCa-AG-GugCGG----UGGU-----AAGG- -5'
29065 3' -56.7 NC_006146.1 + 16523 0.66 0.90585
Target:  5'- cAGCCGGAGGgaCCccgGCaGCCcggguggccccagagGCCAaagUCCu -3'
miRNA:   3'- -UCGGCCUCCaaGG---UG-CGG---------------UGGUa--AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.