Results 1 - 20 of 184 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29065 | 3' | -56.7 | NC_006146.1 | + | 98814 | 1.12 | 0.00184 |
Target: 5'- uAGCCGGAGGUUCCACGCCACCAUUCCa -3' miRNA: 3'- -UCGGCCUCCAAGGUGCGGUGGUAAGG- -5' |
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29065 | 3' | -56.7 | NC_006146.1 | + | 25066 | 0.72 | 0.601986 |
Target: 5'- aGGCCcGAGGUUggagCCggcggGCGCCACCAggUCCc -3' miRNA: 3'- -UCGGcCUCCAA----GG-----UGCGGUGGUa-AGG- -5' |
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29065 | 3' | -56.7 | NC_006146.1 | + | 135185 | 0.72 | 0.613041 |
Target: 5'- gGGCCGGGGGccgggugccccugggUCCGCuGCC-CCGcUCCg -3' miRNA: 3'- -UCGGCCUCCa--------------AGGUG-CGGuGGUaAGG- -5' |
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29065 | 3' | -56.7 | NC_006146.1 | + | 130305 | 0.66 | 0.915303 |
Target: 5'- cGGCaugCGGAGGUUCgGcCGCCcaggGCCAggaCCu -3' miRNA: 3'- -UCG---GCCUCCAAGgU-GCGG----UGGUaa-GG- -5' |
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29065 | 3' | -56.7 | NC_006146.1 | + | 123616 | 0.74 | 0.484838 |
Target: 5'- cAGCCagcGGAGG-UCCACGCaGCCGUcgCCg -3' miRNA: 3'- -UCGG---CCUCCaAGGUGCGgUGGUAa-GG- -5' |
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29065 | 3' | -56.7 | NC_006146.1 | + | 55706 | 0.73 | 0.522906 |
Target: 5'- cGCCGGGGGgcucugCC-CGCCGCUGgccUCCg -3' miRNA: 3'- uCGGCCUCCaa----GGuGCGGUGGUa--AGG- -5' |
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29065 | 3' | -56.7 | NC_006146.1 | + | 167296 | 0.73 | 0.552195 |
Target: 5'- cGGCgGGAGGggCCgGCGCCugCAgggggggCCg -3' miRNA: 3'- -UCGgCCUCCaaGG-UGCGGugGUaa-----GG- -5' |
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29065 | 3' | -56.7 | NC_006146.1 | + | 168228 | 0.73 | 0.552195 |
Target: 5'- cGGCgGGAGGggCCgGCGCCugCAgggggggCCg -3' miRNA: 3'- -UCGgCCUCCaaGG-UGCGGugGUaa-----GG- -5' |
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29065 | 3' | -56.7 | NC_006146.1 | + | 138472 | 0.73 | 0.571994 |
Target: 5'- -cCUGGAGGUaUCCuaACGCCGCCccuauAUUCCa -3' miRNA: 3'- ucGGCCUCCA-AGG--UGCGGUGG-----UAAGG- -5' |
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29065 | 3' | -56.7 | NC_006146.1 | + | 21988 | 0.72 | 0.601986 |
Target: 5'- aGGCCcGAGGUUggagCCggcggGCGCCACCAggUCCc -3' miRNA: 3'- -UCGGcCUCCAA----GG-----UGCGGUGGUa-AGG- -5' |
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29065 | 3' | -56.7 | NC_006146.1 | + | 12754 | 0.72 | 0.601986 |
Target: 5'- aGGCCcGAGGUUggagCCggcggGCGCCACCAggUCCc -3' miRNA: 3'- -UCGGcCUCCAA----GG-----UGCGGUGGUa-AGG- -5' |
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29065 | 3' | -56.7 | NC_006146.1 | + | 49547 | 0.73 | 0.571994 |
Target: 5'- gGGgCGGAGG--CCACGCCgGCCAggCCc -3' miRNA: 3'- -UCgGCCUCCaaGGUGCGG-UGGUaaGG- -5' |
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29065 | 3' | -56.7 | NC_006146.1 | + | 48248 | 0.75 | 0.430382 |
Target: 5'- cGCgCGGAGGgcCCcCGCCGCCG-UCCu -3' miRNA: 3'- uCG-GCCUCCaaGGuGCGGUGGUaAGG- -5' |
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29065 | 3' | -56.7 | NC_006146.1 | + | 15833 | 0.72 | 0.601986 |
Target: 5'- aGGCCcGAGGUUggagCCggcggGCGCCACCAggUCCc -3' miRNA: 3'- -UCGGcCUCCAA----GG-----UGCGGUGGUa-AGG- -5' |
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29065 | 3' | -56.7 | NC_006146.1 | + | 137913 | 0.75 | 0.454456 |
Target: 5'- gGGCCGGGGGUUCCGggggcaGCCGcgacccagcgcgccCCGUUCa -3' miRNA: 3'- -UCGGCCUCCAAGGUg-----CGGU--------------GGUAAGg -5' |
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29065 | 3' | -56.7 | NC_006146.1 | + | 169160 | 0.73 | 0.552195 |
Target: 5'- cGGCgGGAGGggCCgGCGCCugCAgggggggCCg -3' miRNA: 3'- -UCGgCCUCCaaGG-UGCGGugGUaa-----GG- -5' |
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29065 | 3' | -56.7 | NC_006146.1 | + | 18911 | 0.72 | 0.601986 |
Target: 5'- aGGCCcGAGGUUggagCCggcggGCGCCACCAggUCCc -3' miRNA: 3'- -UCGGcCUCCAA----GG-----UGCGGUGGUa-AGG- -5' |
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29065 | 3' | -56.7 | NC_006146.1 | + | 28144 | 0.72 | 0.601986 |
Target: 5'- aGGCCcGAGGUUggagCCggcggGCGCCACCAggUCCc -3' miRNA: 3'- -UCGGcCUCCAA----GG-----UGCGGUGGUa-AGG- -5' |
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29065 | 3' | -56.7 | NC_006146.1 | + | 5076 | 0.74 | 0.466304 |
Target: 5'- cGuuGGAGGcgUCCACGCgGCCAgggacgCCc -3' miRNA: 3'- uCggCCUCCa-AGGUGCGgUGGUaa----GG- -5' |
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29065 | 3' | -56.7 | NC_006146.1 | + | 128193 | 0.73 | 0.522906 |
Target: 5'- cGGCCcagGGGGGcgCCGCGgCGCCGggCCa -3' miRNA: 3'- -UCGG---CCUCCaaGGUGCgGUGGUaaGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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