miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29065 5' -60.3 NC_006146.1 + 98849 1.07 0.00169
Target:  5'- aCGGGAAGAAUGGCGGCGGGGUGCCUGc -3'
miRNA:   3'- -GCCCUUCUUACCGCCGCCCCACGGAC- -5'
29065 5' -60.3 NC_006146.1 + 43621 0.84 0.07762
Target:  5'- gGGGAAGAGggagugGGCGGCGGGGcguggccGCCUGg -3'
miRNA:   3'- gCCCUUCUUa-----CCGCCGCCCCa------CGGAC- -5'
29065 5' -60.3 NC_006146.1 + 137032 0.79 0.153652
Target:  5'- cCGGGGAGGA-GGCcgGGUGGGG-GCCUGg -3'
miRNA:   3'- -GCCCUUCUUaCCG--CCGCCCCaCGGAC- -5'
29065 5' -60.3 NC_006146.1 + 51888 0.78 0.169511
Target:  5'- aGGGGAGggUGGaggcugcguCGGCGGGG-GCCUc -3'
miRNA:   3'- gCCCUUCuuACC---------GCCGCCCCaCGGAc -5'
29065 5' -60.3 NC_006146.1 + 55029 0.76 0.248304
Target:  5'- gCGGGcGGGAUGGgGGuCGGGGccgggGCCUGc -3'
miRNA:   3'- -GCCCuUCUUACCgCC-GCCCCa----CGGAC- -5'
29065 5' -60.3 NC_006146.1 + 4964 0.75 0.266088
Target:  5'- aGGGGccacgAGAGccuccUGGCGGCcucacuaacgcGGGGUGCCUGu -3'
miRNA:   3'- gCCCU-----UCUU-----ACCGCCG-----------CCCCACGGAC- -5'
29065 5' -60.3 NC_006146.1 + 140128 0.75 0.28489
Target:  5'- gGGGGuggcGGAgGUGGUGGCgGGGGUGCCc- -3'
miRNA:   3'- gCCCU----UCU-UACCGCCG-CCCCACGGac -5'
29065 5' -60.3 NC_006146.1 + 60135 0.74 0.304725
Target:  5'- gGGGAGGGAccUGGUGG-GGGGUGUgUGc -3'
miRNA:   3'- gCCCUUCUU--ACCGCCgCCCCACGgAC- -5'
29065 5' -60.3 NC_006146.1 + 42271 0.74 0.329904
Target:  5'- gCGGGAGGAggauggGUGGUGGCGGGGaggaggagcgggaGCCg- -3'
miRNA:   3'- -GCCCUUCU------UACCGCCGCCCCa------------CGGac -5'
29065 5' -60.3 NC_006146.1 + 122633 0.73 0.337898
Target:  5'- cCGGGGcccucuuucgcgccAGGAcGGCGGCGGGG-GCCc- -3'
miRNA:   3'- -GCCCU--------------UCUUaCCGCCGCCCCaCGGac -5'
29065 5' -60.3 NC_006146.1 + 117825 0.73 0.355063
Target:  5'- aGGGGAGGAggaGGCGGUGGcGGUGUUc- -3'
miRNA:   3'- gCCCUUCUUa--CCGCCGCC-CCACGGac -5'
29065 5' -60.3 NC_006146.1 + 53754 0.73 0.362716
Target:  5'- gGGcGAAGAcgGGCGGCGGGcGgagGUCUc -3'
miRNA:   3'- gCC-CUUCUuaCCGCCGCCC-Ca--CGGAc -5'
29065 5' -60.3 NC_006146.1 + 147710 0.73 0.370482
Target:  5'- aGGGccAGGAA-GGCGGCGGG--GCCUGg -3'
miRNA:   3'- gCCC--UUCUUaCCGCCGCCCcaCGGAC- -5'
29065 5' -60.3 NC_006146.1 + 150990 0.72 0.392012
Target:  5'- aGGGGAGAGguaaGGCGGCucucccgggcugccGGGGUcccuccggccgGCCUGg -3'
miRNA:   3'- gCCCUUCUUa---CCGCCG--------------CCCCA-----------CGGAC- -5'
29065 5' -60.3 NC_006146.1 + 157146 0.72 0.392012
Target:  5'- aGGGGAGAGguaaGGCGGCucucccgggcugccGGGGUcccuccggccgGCCUGg -3'
miRNA:   3'- gCCCUUCUUa---CCGCCG--------------CCCCA-----------CGGAC- -5'
29065 5' -60.3 NC_006146.1 + 141756 0.72 0.392012
Target:  5'- aGGGGAGAGguaaGGCGGCucucccgggcugccGGGGUcccuccggccgGCCUGg -3'
miRNA:   3'- gCCCUUCUUa---CCGCCG--------------CCCCA-----------CGGAC- -5'
29065 5' -60.3 NC_006146.1 + 144834 0.72 0.392012
Target:  5'- aGGGGAGAGguaaGGCGGCucucccgggcugccGGGGUcccuccggccgGCCUGg -3'
miRNA:   3'- gCCCUUCUUa---CCGCCG--------------CCCCA-----------CGGAC- -5'
29065 5' -60.3 NC_006146.1 + 154068 0.72 0.392012
Target:  5'- aGGGGAGAGguaaGGCGGCucucccgggcugccGGGGUcccuccggccgGCCUGg -3'
miRNA:   3'- gCCCUUCUUa---CCGCCG--------------CCCCA-----------CGGAC- -5'
29065 5' -60.3 NC_006146.1 + 147912 0.72 0.392012
Target:  5'- aGGGGAGAGguaaGGCGGCucucccgggcugccGGGGUcccuccggccgGCCUGg -3'
miRNA:   3'- gCCCUUCUUa---CCGCCG--------------CCCCA-----------CGGAC- -5'
29065 5' -60.3 NC_006146.1 + 128815 0.72 0.394454
Target:  5'- aGGGAGGGGcGGCGGCagagGGGGUcacCCUGu -3'
miRNA:   3'- gCCCUUCUUaCCGCCG----CCCCAc--GGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.