miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29065 5' -60.3 NC_006146.1 + 98849 1.07 0.00169
Target:  5'- aCGGGAAGAAUGGCGGCGGGGUGCCUGc -3'
miRNA:   3'- -GCCCUUCUUACCGCCGCCCCACGGAC- -5'
29065 5' -60.3 NC_006146.1 + 51504 0.69 0.585878
Target:  5'- uGGGAAGuuGUGGggucUGGCGGGG-GUUUGg -3'
miRNA:   3'- gCCCUUCu-UACC----GCCGCCCCaCGGAC- -5'
29065 5' -60.3 NC_006146.1 + 57055 0.68 0.605538
Target:  5'- aGGGuuGA--GGCGGgaGGGG-GCCUGa -3'
miRNA:   3'- gCCCuuCUuaCCGCCg-CCCCaCGGAC- -5'
29065 5' -60.3 NC_006146.1 + 166666 0.66 0.778722
Target:  5'- gCGGGAAGGggGaGCGGUGug--GCCUGg -3'
miRNA:   3'- -GCCCUUCUuaC-CGCCGCcccaCGGAC- -5'
29065 5' -60.3 NC_006146.1 + 60135 0.74 0.304725
Target:  5'- gGGGAGGGAccUGGUGG-GGGGUGUgUGc -3'
miRNA:   3'- gCCCUUCUU--ACCGCCgCCCCACGgAC- -5'
29065 5' -60.3 NC_006146.1 + 42271 0.74 0.329904
Target:  5'- gCGGGAGGAggauggGUGGUGGCGGGGaggaggagcgggaGCCg- -3'
miRNA:   3'- -GCCCUUCU------UACCGCCGCCCCa------------CGGac -5'
29065 5' -60.3 NC_006146.1 + 147710 0.73 0.370482
Target:  5'- aGGGccAGGAA-GGCGGCGGG--GCCUGg -3'
miRNA:   3'- gCCC--UUCUUaCCGCCGCCCcaCGGAC- -5'
29065 5' -60.3 NC_006146.1 + 42542 0.72 0.419407
Target:  5'- uGGGAagcAGAcgGGgGGUGGGGggGCgCUGa -3'
miRNA:   3'- gCCCU---UCUuaCCgCCGCCCCa-CG-GAC- -5'
29065 5' -60.3 NC_006146.1 + 168205 0.7 0.49033
Target:  5'- cCGGGGccgcgcgugGGGAUGGcCGGCGGGaGggGCCg- -3'
miRNA:   3'- -GCCCU---------UCUUACC-GCCGCCC-Ca-CGGac -5'
29065 5' -60.3 NC_006146.1 + 168717 0.69 0.546978
Target:  5'- gCGGGGAGAAUGacagcugggcGUGGCGGGcGcGCgUGg -3'
miRNA:   3'- -GCCCUUCUUAC----------CGCCGCCC-CaCGgAC- -5'
29065 5' -60.3 NC_006146.1 + 170069 0.7 0.49033
Target:  5'- cCGGGGccgcgcgugGGGAUGGcCGGCGGGaGggGCCg- -3'
miRNA:   3'- -GCCCU---------UCUUACC-GCCGCCC-Ca-CGGac -5'
29065 5' -60.3 NC_006146.1 + 167273 0.7 0.49033
Target:  5'- cCGGGGccgcgcgugGGGAUGGcCGGCGGGaGggGCCg- -3'
miRNA:   3'- -GCCCU---------UCUUACC-GCCGCCC-Ca-CGGac -5'
29065 5' -60.3 NC_006146.1 + 51888 0.78 0.169511
Target:  5'- aGGGGAGggUGGaggcugcguCGGCGGGG-GCCUc -3'
miRNA:   3'- gCCCUUCuuACC---------GCCGCCCCaCGGAc -5'
29065 5' -60.3 NC_006146.1 + 52079 0.7 0.527828
Target:  5'- aCGGGAGGGcu-GCGGuCGGGG-GCCg- -3'
miRNA:   3'- -GCCCUUCUuacCGCC-GCCCCaCGGac -5'
29065 5' -60.3 NC_006146.1 + 55029 0.76 0.248304
Target:  5'- gCGGGcGGGAUGGgGGuCGGGGccgggGCCUGc -3'
miRNA:   3'- -GCCCuUCUUACCgCC-GCCCCa----CGGAC- -5'
29065 5' -60.3 NC_006146.1 + 165994 0.71 0.463038
Target:  5'- aGGGAuccaaagaguaGGGAUGcauGCGGUugugggcaucgGGGGUGCCUGu -3'
miRNA:   3'- gCCCU-----------UCUUAC---CGCCG-----------CCCCACGGAC- -5'
29065 5' -60.3 NC_006146.1 + 167785 0.69 0.546978
Target:  5'- gCGGGGAGAAUGacagcugggcGUGGCGGGcGcGCgUGg -3'
miRNA:   3'- -GCCCUUCUUAC----------CGCCGCCC-CaCGgAC- -5'
29065 5' -60.3 NC_006146.1 + 90212 0.69 0.595696
Target:  5'- gGGGAAGAGgaggaGGCGGUGGaGGaggcaGCCg- -3'
miRNA:   3'- gCCCUUCUUa----CCGCCGCC-CCa----CGGac -5'
29065 5' -60.3 NC_006146.1 + 4964 0.75 0.266088
Target:  5'- aGGGGccacgAGAGccuccUGGCGGCcucacuaacgcGGGGUGCCUGu -3'
miRNA:   3'- gCCCU-----UCUU-----ACCGCCG-----------CCCCACGGAC- -5'
29065 5' -60.3 NC_006146.1 + 53754 0.73 0.362716
Target:  5'- gGGcGAAGAcgGGCGGCGGGcGgagGUCUc -3'
miRNA:   3'- gCC-CUUCUuaCCGCCGCCC-Ca--CGGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.