miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29066 3' -57.8 NC_006146.1 + 7765 0.66 0.859526
Target:  5'- gAGAAucUGCCuGGUCGUGCUCUgcgCCCu- -3'
miRNA:   3'- gUUUU--ACGG-CCGGCGCGGGAa--GGGug -5'
29066 3' -57.8 NC_006146.1 + 39152 0.66 0.859526
Target:  5'- ---cAUGgUGGCCGgGUCCU-CCCAg -3'
miRNA:   3'- guuuUACgGCCGGCgCGGGAaGGGUg -5'
29066 3' -57.8 NC_006146.1 + 12768 0.66 0.859526
Target:  5'- -----aGCCGGCgGgCGCCaccaggUCCCAa -3'
miRNA:   3'- guuuuaCGGCCGgC-GCGGga----AGGGUg -5'
29066 3' -57.8 NC_006146.1 + 18925 0.66 0.859526
Target:  5'- -----aGCCGGCgGgCGCCaccaggUCCCAa -3'
miRNA:   3'- guuuuaCGGCCGgC-GCGGga----AGGGUg -5'
29066 3' -57.8 NC_006146.1 + 28158 0.66 0.859526
Target:  5'- -----aGCCGGCgGgCGCCaccaggUCCCAa -3'
miRNA:   3'- guuuuaCGGCCGgC-GCGGga----AGGGUg -5'
29066 3' -57.8 NC_006146.1 + 103249 0.66 0.859526
Target:  5'- ----uUGgCGGCCGCGUC---CCCGCa -3'
miRNA:   3'- guuuuACgGCCGGCGCGGgaaGGGUG- -5'
29066 3' -57.8 NC_006146.1 + 22002 0.66 0.859526
Target:  5'- -----aGCCGGCgGgCGCCaccaggUCCCAa -3'
miRNA:   3'- guuuuaCGGCCGgC-GCGGga----AGGGUg -5'
29066 3' -57.8 NC_006146.1 + 25080 0.66 0.859526
Target:  5'- -----aGCCGGCgGgCGCCaccaggUCCCAa -3'
miRNA:   3'- guuuuaCGGCCGgC-GCGGga----AGGGUg -5'
29066 3' -57.8 NC_006146.1 + 15847 0.66 0.859526
Target:  5'- -----aGCCGGCgGgCGCCaccaggUCCCAa -3'
miRNA:   3'- guuuuaCGGCCGgC-GCGGga----AGGGUg -5'
29066 3' -57.8 NC_006146.1 + 143560 0.66 0.851835
Target:  5'- -----gGCCuuGCCGCGCCa--CCCGCu -3'
miRNA:   3'- guuuuaCGGc-CGGCGCGGgaaGGGUG- -5'
29066 3' -57.8 NC_006146.1 + 115220 0.66 0.851835
Target:  5'- -----cGgCGGCCGUGCCCgugCUgGCc -3'
miRNA:   3'- guuuuaCgGCCGGCGCGGGaa-GGgUG- -5'
29066 3' -57.8 NC_006146.1 + 103817 0.66 0.851835
Target:  5'- --uGAUGgUGGCCGCcgacCCCUUCUCGg -3'
miRNA:   3'- guuUUACgGCCGGCGc---GGGAAGGGUg -5'
29066 3' -57.8 NC_006146.1 + 167212 0.66 0.835874
Target:  5'- -----gGgCGGCgCGCGgCCUUCCCcCg -3'
miRNA:   3'- guuuuaCgGCCG-GCGCgGGAAGGGuG- -5'
29066 3' -57.8 NC_006146.1 + 169076 0.66 0.835874
Target:  5'- -----gGgCGGCgCGCGgCCUUCCCcCg -3'
miRNA:   3'- guuuuaCgGCCG-GCGCgGGAAGGGuG- -5'
29066 3' -57.8 NC_006146.1 + 168144 0.66 0.835874
Target:  5'- -----gGgCGGCgCGCGgCCUUCCCcCg -3'
miRNA:   3'- guuuuaCgGCCG-GCGCgGGAAGGGuG- -5'
29066 3' -57.8 NC_006146.1 + 100629 0.66 0.835874
Target:  5'- ---cAUGUCGGCCGUGgucCCCaUCaCCGCc -3'
miRNA:   3'- guuuUACGGCCGGCGC---GGGaAG-GGUG- -5'
29066 3' -57.8 NC_006146.1 + 170008 0.66 0.835874
Target:  5'- -----gGgCGGCgCGCGgCCUUCCCcCg -3'
miRNA:   3'- guuuuaCgGCCG-GCGCgGGAAGGGuG- -5'
29066 3' -57.8 NC_006146.1 + 32939 0.66 0.819187
Target:  5'- cCGGGAgGcCCGGCCGCGaUCCUcCCC-Cg -3'
miRNA:   3'- -GUUUUaC-GGCCGGCGC-GGGAaGGGuG- -5'
29066 3' -57.8 NC_006146.1 + 136770 0.66 0.819187
Target:  5'- cCGGGAgGcCCGGCCGCGaUCCUcCCC-Cg -3'
miRNA:   3'- -GUUUUaC-GGCCGGCGC-GGGAaGGGuG- -5'
29066 3' -57.8 NC_006146.1 + 120858 0.66 0.819187
Target:  5'- ----cUGCUGGaCUGCGCCUcccUCCUGCg -3'
miRNA:   3'- guuuuACGGCC-GGCGCGGGa--AGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.