miRNA display CGI


Results 1 - 20 of 103 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29066 3' -57.8 NC_006146.1 + 99476 1.1 0.001799
Target:  5'- cCAAAAUGCCGGCCGCGCCCUUCCCACg -3'
miRNA:   3'- -GUUUUACGGCCGGCGCGGGAAGGGUG- -5'
29066 3' -57.8 NC_006146.1 + 167180 0.8 0.167932
Target:  5'- aCGGGAgGCCGGCgCGCGCCCggggUCCCGg -3'
miRNA:   3'- -GUUUUaCGGCCG-GCGCGGGa---AGGGUg -5'
29066 3' -57.8 NC_006146.1 + 168112 0.8 0.167932
Target:  5'- aCGGGAgGCCGGCgCGCGCCCggggUCCCGg -3'
miRNA:   3'- -GUUUUaCGGCCG-GCGCGGGa---AGGGUg -5'
29066 3' -57.8 NC_006146.1 + 169976 0.8 0.167932
Target:  5'- aCGGGAgGCCGGCgCGCGCCCggggUCCCGg -3'
miRNA:   3'- -GUUUUaCGGCCG-GCGCGGGa---AGGGUg -5'
29066 3' -57.8 NC_006146.1 + 169044 0.8 0.167932
Target:  5'- aCGGGAgGCCGGCgCGCGCCCggggUCCCGg -3'
miRNA:   3'- -GUUUUaCGGCCG-GCGCGGGa---AGGGUg -5'
29066 3' -57.8 NC_006146.1 + 118182 0.78 0.242594
Target:  5'- uCAAGAgcuuucugGCCGGCCGCcCCCUgaccUCCCGCc -3'
miRNA:   3'- -GUUUUa-------CGGCCGGCGcGGGA----AGGGUG- -5'
29066 3' -57.8 NC_006146.1 + 115517 0.75 0.350577
Target:  5'- --uGAUGCUGGCCucgGUGCCCcgggcgUCCCGCg -3'
miRNA:   3'- guuUUACGGCCGG---CGCGGGa-----AGGGUG- -5'
29066 3' -57.8 NC_006146.1 + 160169 0.73 0.479216
Target:  5'- -----aGCUGGCgUGUGCCCUcCCCACu -3'
miRNA:   3'- guuuuaCGGCCG-GCGCGGGAaGGGUG- -5'
29066 3' -57.8 NC_006146.1 + 135640 0.72 0.488616
Target:  5'- aUAAGGaGCCGGCCGUGCUCUgaCUCAUa -3'
miRNA:   3'- -GUUUUaCGGCCGGCGCGGGAa-GGGUG- -5'
29066 3' -57.8 NC_006146.1 + 93565 0.72 0.488616
Target:  5'- -----aGCCGGCCuCGUCCUUCaCCAUc -3'
miRNA:   3'- guuuuaCGGCCGGcGCGGGAAG-GGUG- -5'
29066 3' -57.8 NC_006146.1 + 112984 0.72 0.506708
Target:  5'- -----cGCCGGCCaGCGCCCUcugcaugUCCUggACa -3'
miRNA:   3'- guuuuaCGGCCGG-CGCGGGA-------AGGG--UG- -5'
29066 3' -57.8 NC_006146.1 + 21799 0.71 0.536812
Target:  5'- gCGGGAUGCCGGgCGCGCgCC--CCCGu -3'
miRNA:   3'- -GUUUUACGGCCgGCGCG-GGaaGGGUg -5'
29066 3' -57.8 NC_006146.1 + 23775 0.71 0.556561
Target:  5'- gAGAAUGgCGGCCuGCGCgUCUggggCCCGCu -3'
miRNA:   3'- gUUUUACgGCCGG-CGCG-GGAa---GGGUG- -5'
29066 3' -57.8 NC_006146.1 + 169389 0.71 0.556561
Target:  5'- -----cGCCgGGCCGCGCCCccggCCCc- -3'
miRNA:   3'- guuuuaCGG-CCGGCGCGGGaa--GGGug -5'
29066 3' -57.8 NC_006146.1 + 167525 0.71 0.556561
Target:  5'- -----cGCCgGGCCGCGCCCccggCCCc- -3'
miRNA:   3'- guuuuaCGG-CCGGCGCGGGaa--GGGug -5'
29066 3' -57.8 NC_006146.1 + 170320 0.71 0.556561
Target:  5'- -----cGCCgGGCCGCGCCCccggCCCc- -3'
miRNA:   3'- guuuuaCGG-CCGGCGCGGGaa--GGGug -5'
29066 3' -57.8 NC_006146.1 + 168457 0.71 0.556561
Target:  5'- -----cGCCgGGCCGCGCCCccggCCCc- -3'
miRNA:   3'- guuuuaCGG-CCGGCGCGGGaa--GGGug -5'
29066 3' -57.8 NC_006146.1 + 96040 0.71 0.556561
Target:  5'- gCAugGUGCCGGCCGUcaagaaGCCCaucaCCCAg -3'
miRNA:   3'- -GUuuUACGGCCGGCG------CGGGaa--GGGUg -5'
29066 3' -57.8 NC_006146.1 + 117290 0.71 0.565517
Target:  5'- --cGGUGCaCGGCCcggugccGCGCCCUUUCCcCg -3'
miRNA:   3'- guuUUACG-GCCGG-------CGCGGGAAGGGuG- -5'
29066 3' -57.8 NC_006146.1 + 105881 0.71 0.576513
Target:  5'- gCAAGAUagCGGCCaGCGCCCccUUCCCAa -3'
miRNA:   3'- -GUUUUAcgGCCGG-CGCGGG--AAGGGUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.