miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29066 3' -57.8 NC_006146.1 + 136770 0.66 0.819187
Target:  5'- cCGGGAgGcCCGGCCGCGaUCCUcCCC-Cg -3'
miRNA:   3'- -GUUUUaC-GGCCGGCGC-GGGAaGGGuG- -5'
29066 3' -57.8 NC_006146.1 + 53025 0.66 0.819187
Target:  5'- uCAcGcgGCUGGCCGCGgCCg--CCGCc -3'
miRNA:   3'- -GUuUuaCGGCCGGCGCgGGaagGGUG- -5'
29066 3' -57.8 NC_006146.1 + 57221 0.67 0.81059
Target:  5'- -----gGCCggaGGCCGgGCCCgggCCCGa -3'
miRNA:   3'- guuuuaCGG---CCGGCgCGGGaa-GGGUg -5'
29066 3' -57.8 NC_006146.1 + 155711 0.67 0.809721
Target:  5'- uCGAGGUGaaggCGGCCGCGCagucggCCUUCagcgcuuCCACg -3'
miRNA:   3'- -GUUUUACg---GCCGGCGCG------GGAAG-------GGUG- -5'
29066 3' -57.8 NC_006146.1 + 150985 0.67 0.809721
Target:  5'- --uGAUGCCGuagauguGCCGgGCCCUgUCCAg -3'
miRNA:   3'- guuUUACGGC-------CGGCgCGGGAaGGGUg -5'
29066 3' -57.8 NC_006146.1 + 40616 0.67 0.801834
Target:  5'- ---cAUGCC-GCCGCuGCUUcUCCCGCg -3'
miRNA:   3'- guuuUACGGcCGGCG-CGGGaAGGGUG- -5'
29066 3' -57.8 NC_006146.1 + 53689 0.67 0.801834
Target:  5'- gAGGAUGUCGuCCGCGCCUagcgggggcacgUUCCC-Cg -3'
miRNA:   3'- gUUUUACGGCcGGCGCGGG------------AAGGGuG- -5'
29066 3' -57.8 NC_006146.1 + 117120 0.67 0.801834
Target:  5'- -----cGCgGGCCGagGCCCUcgUCCgGCg -3'
miRNA:   3'- guuuuaCGgCCGGCg-CGGGA--AGGgUG- -5'
29066 3' -57.8 NC_006146.1 + 115418 0.67 0.792928
Target:  5'- ----cUGgCGGCCGgGCCUcgUUCUCGCc -3'
miRNA:   3'- guuuuACgGCCGGCgCGGG--AAGGGUG- -5'
29066 3' -57.8 NC_006146.1 + 149208 0.67 0.792928
Target:  5'- gCAGGAUGuuGGCCGCcCCCUgca-GCa -3'
miRNA:   3'- -GUUUUACggCCGGCGcGGGAagggUG- -5'
29066 3' -57.8 NC_006146.1 + 27016 0.67 0.792928
Target:  5'- gAGAGUGUCgaacgugguaGGCCGagcacaucgaUGCCCgUCCCACg -3'
miRNA:   3'- gUUUUACGG----------CCGGC----------GCGGGaAGGGUG- -5'
29066 3' -57.8 NC_006146.1 + 43273 0.67 0.792928
Target:  5'- aCAAGAggcagcggGCCGGCgGUGCCg--CCCAg -3'
miRNA:   3'- -GUUUUa-------CGGCCGgCGCGGgaaGGGUg -5'
29066 3' -57.8 NC_006146.1 + 78579 0.67 0.792928
Target:  5'- ----cUGCCccaGGCCGgGCCCgcccCCCAg -3'
miRNA:   3'- guuuuACGG---CCGGCgCGGGaa--GGGUg -5'
29066 3' -57.8 NC_006146.1 + 47642 0.67 0.792928
Target:  5'- -----aGCCgucucuGGCCGCgGCCCggCCCAg -3'
miRNA:   3'- guuuuaCGG------CCGGCG-CGGGaaGGGUg -5'
29066 3' -57.8 NC_006146.1 + 13271 0.67 0.792928
Target:  5'- --uGGUGCCcaagacccaGGCgGUGCCCg-CCCGCg -3'
miRNA:   3'- guuUUACGG---------CCGgCGCGGGaaGGGUG- -5'
29066 3' -57.8 NC_006146.1 + 5112 0.67 0.792928
Target:  5'- -----aGCCGGCCGUGCCa---CCGu -3'
miRNA:   3'- guuuuaCGGCCGGCGCGGgaagGGUg -5'
29066 3' -57.8 NC_006146.1 + 33030 0.67 0.79203
Target:  5'- ----cUGCCGGCCcggggcgGgGCCCgggacacgCCCACc -3'
miRNA:   3'- guuuuACGGCCGG-------CgCGGGaa------GGGUG- -5'
29066 3' -57.8 NC_006146.1 + 98722 0.67 0.78388
Target:  5'- -----gGCC-GCCGCGUCCUcgucgaCCCGCa -3'
miRNA:   3'- guuuuaCGGcCGGCGCGGGAa-----GGGUG- -5'
29066 3' -57.8 NC_006146.1 + 94603 0.67 0.78388
Target:  5'- gGAGAgGaaGaGCCGCGUCCagCCCACg -3'
miRNA:   3'- gUUUUaCggC-CGGCGCGGGaaGGGUG- -5'
29066 3' -57.8 NC_006146.1 + 146796 0.67 0.78388
Target:  5'- --cGGUGCCaGCCGCcCUCgaCCCGCg -3'
miRNA:   3'- guuUUACGGcCGGCGcGGGaaGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.