miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29066 3' -57.8 NC_006146.1 + 800 0.67 0.765392
Target:  5'- -----cGCCGGCCcccccugcggcGCcgGCCCcUCCCGCc -3'
miRNA:   3'- guuuuaCGGCCGG-----------CG--CGGGaAGGGUG- -5'
29066 3' -57.8 NC_006146.1 + 1731 0.67 0.774698
Target:  5'- -----cGCCGGCCcccccugcaggcGCcgGCCCcUCCCGCc -3'
miRNA:   3'- guuuuaCGGCCGG------------CG--CGGGaAGGGUG- -5'
29066 3' -57.8 NC_006146.1 + 2663 0.67 0.774698
Target:  5'- -----cGCCGGCCcccccugcaggcGCcgGCCCcUCCCGCc -3'
miRNA:   3'- guuuuaCGGCCGG------------CG--CGGGaAGGGUG- -5'
29066 3' -57.8 NC_006146.1 + 2852 0.68 0.755969
Target:  5'- gCGGGGUGCCGGuuGUGgCCggcUUCUACc -3'
miRNA:   3'- -GUUUUACGGCCggCGCgGGa--AGGGUG- -5'
29066 3' -57.8 NC_006146.1 + 3595 0.67 0.774698
Target:  5'- -----cGCCGGCCcccccugcaggcGCcgGCCCcUCCCGCc -3'
miRNA:   3'- guuuuaCGGCCGG------------CG--CGGGaAGGGUG- -5'
29066 3' -57.8 NC_006146.1 + 5112 0.67 0.792928
Target:  5'- -----aGCCGGCCGUGCCa---CCGu -3'
miRNA:   3'- guuuuaCGGCCGGCGCGGgaagGGUg -5'
29066 3' -57.8 NC_006146.1 + 7765 0.66 0.859526
Target:  5'- gAGAAucUGCCuGGUCGUGCUCUgcgCCCu- -3'
miRNA:   3'- gUUUU--ACGG-CCGGCGCGGGAa--GGGug -5'
29066 3' -57.8 NC_006146.1 + 12768 0.66 0.859526
Target:  5'- -----aGCCGGCgGgCGCCaccaggUCCCAa -3'
miRNA:   3'- guuuuaCGGCCGgC-GCGGga----AGGGUg -5'
29066 3' -57.8 NC_006146.1 + 13271 0.67 0.792928
Target:  5'- --uGGUGCCcaagacccaGGCgGUGCCCg-CCCGCg -3'
miRNA:   3'- guuUUACGG---------CCGgCGCGGGaaGGGUG- -5'
29066 3' -57.8 NC_006146.1 + 14279 0.69 0.70743
Target:  5'- aCAGAAUGaCCGcGCgugcaGCGCCCUgUCCCu- -3'
miRNA:   3'- -GUUUUAC-GGC-CGg----CGCGGGA-AGGGug -5'
29066 3' -57.8 NC_006146.1 + 15847 0.66 0.859526
Target:  5'- -----aGCCGGCgGgCGCCaccaggUCCCAa -3'
miRNA:   3'- guuuuaCGGCCGgC-GCGGga----AGGGUg -5'
29066 3' -57.8 NC_006146.1 + 18925 0.66 0.859526
Target:  5'- -----aGCCGGCgGgCGCCaccaggUCCCAa -3'
miRNA:   3'- guuuuaCGGCCGgC-GCGGga----AGGGUg -5'
29066 3' -57.8 NC_006146.1 + 19503 0.68 0.736812
Target:  5'- ----cUGCC-GCCGCGCCauccCCCGCc -3'
miRNA:   3'- guuuuACGGcCGGCGCGGgaa-GGGUG- -5'
29066 3' -57.8 NC_006146.1 + 19724 0.69 0.667419
Target:  5'- gGGAGgagGCCGGCCGCuaCCgccgcaUCCUGCu -3'
miRNA:   3'- gUUUUa--CGGCCGGCGcgGGa-----AGGGUG- -5'
29066 3' -57.8 NC_006146.1 + 20582 0.69 0.687514
Target:  5'- -----aGCCGGCCuGCGCCCgggcgaggaCUACg -3'
miRNA:   3'- guuuuaCGGCCGG-CGCGGGaag------GGUG- -5'
29066 3' -57.8 NC_006146.1 + 20920 0.67 0.774698
Target:  5'- -uGAGU-CCGGCCGaccugcagGCCCUggcccccacUCCCACg -3'
miRNA:   3'- guUUUAcGGCCGGCg-------CGGGA---------AGGGUG- -5'
29066 3' -57.8 NC_006146.1 + 21799 0.71 0.536812
Target:  5'- gCGGGAUGCCGGgCGCGCgCC--CCCGu -3'
miRNA:   3'- -GUUUUACGGCCgGCGCG-GGaaGGGUg -5'
29066 3' -57.8 NC_006146.1 + 22002 0.66 0.859526
Target:  5'- -----aGCCGGCgGgCGCCaccaggUCCCAa -3'
miRNA:   3'- guuuuaCGGCCGgC-GCGGga----AGGGUg -5'
29066 3' -57.8 NC_006146.1 + 23775 0.71 0.556561
Target:  5'- gAGAAUGgCGGCCuGCGCgUCUggggCCCGCu -3'
miRNA:   3'- gUUUUACgGCCGG-CGCG-GGAa---GGGUG- -5'
29066 3' -57.8 NC_006146.1 + 25080 0.66 0.859526
Target:  5'- -----aGCCGGCgGgCGCCaccaggUCCCAa -3'
miRNA:   3'- guuuuaCGGCCGgC-GCGGga----AGGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.