miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29066 3' -57.8 NC_006146.1 + 99476 1.1 0.001799
Target:  5'- cCAAAAUGCCGGCCGCGCCCUUCCCACg -3'
miRNA:   3'- -GUUUUACGGCCGGCGCGGGAAGGGUG- -5'
29066 3' -57.8 NC_006146.1 + 102665 0.7 0.626956
Target:  5'- ----cUGUCaGCCGCGCCUccCCCGCu -3'
miRNA:   3'- guuuuACGGcCGGCGCGGGaaGGGUG- -5'
29066 3' -57.8 NC_006146.1 + 98338 0.7 0.647211
Target:  5'- -----gGCCGGgCGCgGCCCgUCCCGg -3'
miRNA:   3'- guuuuaCGGCCgGCG-CGGGaAGGGUg -5'
29066 3' -57.8 NC_006146.1 + 39152 0.66 0.859526
Target:  5'- ---cAUGgUGGCCGgGUCCU-CCCAg -3'
miRNA:   3'- guuuUACgGCCGGCgCGGGAaGGGUg -5'
29066 3' -57.8 NC_006146.1 + 169976 0.8 0.167932
Target:  5'- aCGGGAgGCCGGCgCGCGCCCggggUCCCGg -3'
miRNA:   3'- -GUUUUaCGGCCG-GCGCGGGa---AGGGUg -5'
29066 3' -57.8 NC_006146.1 + 93565 0.72 0.488616
Target:  5'- -----aGCCGGCCuCGUCCUUCaCCAUc -3'
miRNA:   3'- guuuuaCGGCCGGcGCGGGAAG-GGUG- -5'
29066 3' -57.8 NC_006146.1 + 96040 0.71 0.556561
Target:  5'- gCAugGUGCCGGCCGUcaagaaGCCCaucaCCCAg -3'
miRNA:   3'- -GUuuUACGGCCGGCG------CGGGaa--GGGUg -5'
29066 3' -57.8 NC_006146.1 + 167525 0.71 0.556561
Target:  5'- -----cGCCgGGCCGCGCCCccggCCCc- -3'
miRNA:   3'- guuuuaCGG-CCGGCGCGGGaa--GGGug -5'
29066 3' -57.8 NC_006146.1 + 170320 0.71 0.556561
Target:  5'- -----cGCCgGGCCGCGCCCccggCCCc- -3'
miRNA:   3'- guuuuaCGG-CCGGCGCGGGaa--GGGug -5'
29066 3' -57.8 NC_006146.1 + 56176 0.7 0.626956
Target:  5'- gAGGAUGCgccgauacuCGGCCGCcaggGCCCgggUCUCGCg -3'
miRNA:   3'- gUUUUACG---------GCCGGCG----CGGGa--AGGGUG- -5'
29066 3' -57.8 NC_006146.1 + 52338 0.71 0.586551
Target:  5'- cCGGGGUGCCcggGGCgGCGUCCUUUUgGCa -3'
miRNA:   3'- -GUUUUACGG---CCGgCGCGGGAAGGgUG- -5'
29066 3' -57.8 NC_006146.1 + 169389 0.71 0.556561
Target:  5'- -----cGCCgGGCCGCGCCCccggCCCc- -3'
miRNA:   3'- guuuuaCGG-CCGGCGCGGGaa--GGGug -5'
29066 3' -57.8 NC_006146.1 + 167180 0.8 0.167932
Target:  5'- aCGGGAgGCCGGCgCGCGCCCggggUCCCGg -3'
miRNA:   3'- -GUUUUaCGGCCG-GCGCGGGa---AGGGUg -5'
29066 3' -57.8 NC_006146.1 + 136717 0.7 0.616831
Target:  5'- gGGGGUgGCCGGCCGCuGCCgggUCCGCu -3'
miRNA:   3'- gUUUUA-CGGCCGGCG-CGGgaaGGGUG- -5'
29066 3' -57.8 NC_006146.1 + 168112 0.8 0.167932
Target:  5'- aCGGGAgGCCGGCgCGCGCCCggggUCCCGg -3'
miRNA:   3'- -GUUUUaCGGCCG-GCGCGGGa---AGGGUg -5'
29066 3' -57.8 NC_006146.1 + 168457 0.71 0.556561
Target:  5'- -----cGCCgGGCCGCGCCCccggCCCc- -3'
miRNA:   3'- guuuuaCGG-CCGGCGCGGGaa--GGGug -5'
29066 3' -57.8 NC_006146.1 + 149045 0.7 0.626956
Target:  5'- gGGGGUgGCuCGGCUGCuCuCCUUCCCGCu -3'
miRNA:   3'- gUUUUA-CG-GCCGGCGcG-GGAAGGGUG- -5'
29066 3' -57.8 NC_006146.1 + 44588 0.7 0.626956
Target:  5'- -----gGCCcccgGGCCGCuGCCUUUCCCGu -3'
miRNA:   3'- guuuuaCGG----CCGGCG-CGGGAAGGGUg -5'
29066 3' -57.8 NC_006146.1 + 169044 0.8 0.167932
Target:  5'- aCGGGAgGCCGGCgCGCGCCCggggUCCCGg -3'
miRNA:   3'- -GUUUUaCGGCCG-GCGCGGGa---AGGGUg -5'
29066 3' -57.8 NC_006146.1 + 112984 0.72 0.506708
Target:  5'- -----cGCCGGCCaGCGCCCUcugcaugUCCUggACa -3'
miRNA:   3'- guuuuaCGGCCGG-CGCGGGA-------AGGG--UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.