miRNA display CGI


Results 1 - 20 of 229 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29066 5' -56.6 NC_006146.1 + 41492 0.66 0.918152
Target:  5'- uGGGCcuu--GGGGu-GCgCGGGGACGa -3'
miRNA:   3'- -CCCGucuuuCCCCuuCG-GCCCUUGCa -5'
29066 5' -56.6 NC_006146.1 + 127069 0.66 0.917588
Target:  5'- uGGCGGcgc-GGGAAGCCGaaagggccagggcGGAGCGg -3'
miRNA:   3'- cCCGUCuuucCCCUUCGGC-------------CCUUGCa -5'
29066 5' -56.6 NC_006146.1 + 166718 0.66 0.912415
Target:  5'- gGGGguGuGAGGGGuuGAGCCaauGGGcAugGg -3'
miRNA:   3'- -CCCguCuUUCCCC--UUCGG---CCC-UugCa -5'
29066 5' -56.6 NC_006146.1 + 139975 0.66 0.912415
Target:  5'- uGGGCAGGuguGGGcAGgUGGGggUGUu -3'
miRNA:   3'- -CCCGUCUuucCCCuUCgGCCCuuGCA- -5'
29066 5' -56.6 NC_006146.1 + 132943 0.66 0.912415
Target:  5'- -cGCGGAGGGGGGggGUgGuGGAu--- -3'
miRNA:   3'- ccCGUCUUUCCCCuuCGgC-CCUugca -5'
29066 5' -56.6 NC_006146.1 + 109833 0.66 0.912415
Target:  5'- cGGGCAGucccuGGGGGGugguguGCCauagaGGGGAgGg -3'
miRNA:   3'- -CCCGUCuu---UCCCCUu-----CGG-----CCCUUgCa -5'
29066 5' -56.6 NC_006146.1 + 139856 0.66 0.912415
Target:  5'- uGGguGAcgccauGGGGGGAGGUgUGGGAuuACGUc -3'
miRNA:   3'- cCCguCU------UUCCCCUUCG-GCCCU--UGCA- -5'
29066 5' -56.6 NC_006146.1 + 26738 0.66 0.912415
Target:  5'- cGGGCAGGuuGGGGGuuaagAGUgGGuGAAUa- -3'
miRNA:   3'- -CCCGUCUuuCCCCU-----UCGgCC-CUUGca -5'
29066 5' -56.6 NC_006146.1 + 128917 0.66 0.912415
Target:  5'- -cGCAGcugugcGGGucGAGGCCGGGAACa- -3'
miRNA:   3'- ccCGUCuuu---CCC--CUUCGGCCCUUGca -5'
29066 5' -56.6 NC_006146.1 + 92266 0.66 0.912415
Target:  5'- gGGGCGGGcccggccuGGGGcuGCUgcugGGGGGCGg -3'
miRNA:   3'- -CCCGUCUuu------CCCCuuCGG----CCCUUGCa -5'
29066 5' -56.6 NC_006146.1 + 92176 0.66 0.912415
Target:  5'- gGGGCGGGcccggccuGGGGcuGCUgcugGGGGGCGg -3'
miRNA:   3'- -CCCGUCUuu------CCCCuuCGG----CCCUUGCa -5'
29066 5' -56.6 NC_006146.1 + 92027 0.66 0.912415
Target:  5'- gGGGCGGGcccggccuGGGGcuGCUgcugGGGGGCGg -3'
miRNA:   3'- -CCCGUCUuu------CCCCuuCGG----CCCUUGCa -5'
29066 5' -56.6 NC_006146.1 + 92116 0.66 0.912415
Target:  5'- gGGGCGGGcccggccuGGGGcuGCUgcugGGGGGCGg -3'
miRNA:   3'- -CCCGUCUuu------CCCCuuCGG----CCCUUGCa -5'
29066 5' -56.6 NC_006146.1 + 128410 0.66 0.911829
Target:  5'- aGGCAGAAcacggccAGGGGAGGgugauCCGGGccGCa- -3'
miRNA:   3'- cCCGUCUU-------UCCCCUUC-----GGCCCu-UGca -5'
29066 5' -56.6 NC_006146.1 + 168507 0.66 0.906448
Target:  5'- -cGCGGAGAGGccguguguGGAGGCCGGGc---- -3'
miRNA:   3'- ccCGUCUUUCC--------CCUUCGGCCCuugca -5'
29066 5' -56.6 NC_006146.1 + 167575 0.66 0.906448
Target:  5'- -cGCGGAGAGGccguguguGGAGGCCGGGc---- -3'
miRNA:   3'- ccCGUCUUUCC--------CCUUCGGCCCuugca -5'
29066 5' -56.6 NC_006146.1 + 113966 0.66 0.906448
Target:  5'- uGGaAGAGGGGGGugcCCGGGGGCu- -3'
miRNA:   3'- cCCgUCUUUCCCCuucGGCCCUUGca -5'
29066 5' -56.6 NC_006146.1 + 170370 0.66 0.906448
Target:  5'- -cGCGGAGAGGccguguguGGAGGCCGGGc---- -3'
miRNA:   3'- ccCGUCUUUCC--------CCUUCGGCCCuugca -5'
29066 5' -56.6 NC_006146.1 + 169439 0.66 0.906448
Target:  5'- -cGCGGAGAGGccguguguGGAGGCCGGGc---- -3'
miRNA:   3'- ccCGUCUUUCC--------CCUUCGGCCCuugca -5'
29066 5' -56.6 NC_006146.1 + 24191 0.66 0.906448
Target:  5'- aGGGCAGAgGAGGGcugggccugcGAgguucuguuggGGCCGGGGcCGc -3'
miRNA:   3'- -CCCGUCU-UUCCC----------CU-----------UCGGCCCUuGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.