miRNA display CGI


Results 1 - 20 of 229 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29066 5' -56.6 NC_006146.1 + 127069 0.66 0.917588
Target:  5'- uGGCGGcgc-GGGAAGCCGaaagggccagggcGGAGCGg -3'
miRNA:   3'- cCCGUCuuucCCCUUCGGC-------------CCUUGCa -5'
29066 5' -56.6 NC_006146.1 + 24191 0.66 0.906448
Target:  5'- aGGGCAGAgGAGGGcugggccugcGAgguucuguuggGGCCGGGGcCGc -3'
miRNA:   3'- -CCCGUCU-UUCCC----------CU-----------UCGGCCCUuGCa -5'
29066 5' -56.6 NC_006146.1 + 85377 0.66 0.900253
Target:  5'- cGGUGGAGAcGccaGAAGCCGGGAccgGCGUg -3'
miRNA:   3'- cCCGUCUUUcCc--CUUCGGCCCU---UGCA- -5'
29066 5' -56.6 NC_006146.1 + 64248 0.66 0.900253
Target:  5'- gGGGCGGGAGGGGcGuGGCUcgcuccgaacauGGGuAAUGUu -3'
miRNA:   3'- -CCCGUCUUUCCC-CuUCGG------------CCC-UUGCA- -5'
29066 5' -56.6 NC_006146.1 + 115044 0.66 0.900253
Target:  5'- gGGaGUAGGAGGaGGaGggGaaGGGGGCGa -3'
miRNA:   3'- -CC-CGUCUUUC-CC-CuuCggCCCUUGCa -5'
29066 5' -56.6 NC_006146.1 + 3073 0.66 0.893831
Target:  5'- aGGgGGAGcccGGGAAGacCCGGGGGCGg -3'
miRNA:   3'- cCCgUCUUuc-CCCUUC--GGCCCUUGCa -5'
29066 5' -56.6 NC_006146.1 + 2141 0.66 0.893831
Target:  5'- aGGgGGAGcccGGGAAGacCCGGGGGCGg -3'
miRNA:   3'- cCCgUCUUuc-CCCUUC--GGCCCUUGCa -5'
29066 5' -56.6 NC_006146.1 + 1209 0.66 0.893831
Target:  5'- aGGgGGAGcccGGGAAGacCCGGGGGCGg -3'
miRNA:   3'- cCCgUCUUuc-CCCUUC--GGCCCUUGCa -5'
29066 5' -56.6 NC_006146.1 + 278 0.66 0.893831
Target:  5'- aGGgGGAGcccGGGAAGacCCGGGGGCGg -3'
miRNA:   3'- cCCgUCUUuc-CCCUUC--GGCCCUUGCa -5'
29066 5' -56.6 NC_006146.1 + 113966 0.66 0.906448
Target:  5'- uGGaAGAGGGGGGugcCCGGGGGCu- -3'
miRNA:   3'- cCCgUCUUUCCCCuucGGCCCUUGca -5'
29066 5' -56.6 NC_006146.1 + 40475 0.66 0.906448
Target:  5'- uGGguGAAGGGGGGcagaggGGCCGcgaaaGGcAGCGg -3'
miRNA:   3'- cCCguCUUUCCCCU------UCGGC-----CC-UUGCa -5'
29066 5' -56.6 NC_006146.1 + 128410 0.66 0.911829
Target:  5'- aGGCAGAAcacggccAGGGGAGGgugauCCGGGccGCa- -3'
miRNA:   3'- cCCGUCUU-------UCCCCUUC-----GGCCCu-UGca -5'
29066 5' -56.6 NC_006146.1 + 128917 0.66 0.912415
Target:  5'- -cGCAGcugugcGGGucGAGGCCGGGAACa- -3'
miRNA:   3'- ccCGUCuuu---CCC--CUUCGGCCCUUGca -5'
29066 5' -56.6 NC_006146.1 + 92266 0.66 0.912415
Target:  5'- gGGGCGGGcccggccuGGGGcuGCUgcugGGGGGCGg -3'
miRNA:   3'- -CCCGUCUuu------CCCCuuCGG----CCCUUGCa -5'
29066 5' -56.6 NC_006146.1 + 92176 0.66 0.912415
Target:  5'- gGGGCGGGcccggccuGGGGcuGCUgcugGGGGGCGg -3'
miRNA:   3'- -CCCGUCUuu------CCCCuuCGG----CCCUUGCa -5'
29066 5' -56.6 NC_006146.1 + 92116 0.66 0.912415
Target:  5'- gGGGCGGGcccggccuGGGGcuGCUgcugGGGGGCGg -3'
miRNA:   3'- -CCCGUCUuu------CCCCuuCGG----CCCUUGCa -5'
29066 5' -56.6 NC_006146.1 + 92027 0.66 0.912415
Target:  5'- gGGGCGGGcccggccuGGGGcuGCUgcugGGGGGCGg -3'
miRNA:   3'- -CCCGUCUuu------CCCCuuCGG----CCCUUGCa -5'
29066 5' -56.6 NC_006146.1 + 26738 0.66 0.912415
Target:  5'- cGGGCAGGuuGGGGGuuaagAGUgGGuGAAUa- -3'
miRNA:   3'- -CCCGUCUuuCCCCU-----UCGgCC-CUUGca -5'
29066 5' -56.6 NC_006146.1 + 139856 0.66 0.912415
Target:  5'- uGGguGAcgccauGGGGGGAGGUgUGGGAuuACGUc -3'
miRNA:   3'- cCCguCU------UUCCCCUUCG-GCCCU--UGCA- -5'
29066 5' -56.6 NC_006146.1 + 109833 0.66 0.912415
Target:  5'- cGGGCAGucccuGGGGGGugguguGCCauagaGGGGAgGg -3'
miRNA:   3'- -CCCGUCuu---UCCCCUu-----CGG-----CCCUUgCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.