Results 1 - 20 of 229 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29066 | 5' | -56.6 | NC_006146.1 | + | 99511 | 1.1 | 0.002696 |
Target: 5'- uGGGCAGAAAGGGGAAGCCGGGAACGUa -3' miRNA: 3'- -CCCGUCUUUCCCCUUCGGCCCUUGCA- -5' |
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29066 | 5' | -56.6 | NC_006146.1 | + | 33206 | 0.88 | 0.075855 |
Target: 5'- cGGGgGGAggccgGAGGGGGAGCCGGGAugGg -3' miRNA: 3'- -CCCgUCU-----UUCCCCUUCGGCCCUugCa -5' |
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29066 | 5' | -56.6 | NC_006146.1 | + | 10 | 0.84 | 0.13434 |
Target: 5'- aGGGgGGAGGGGGGGuugaggGGCCGGGAugGa -3' miRNA: 3'- -CCCgUCUUUCCCCU------UCGGCCCUugCa -5' |
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29066 | 5' | -56.6 | NC_006146.1 | + | 142995 | 0.83 | 0.148706 |
Target: 5'- aGGCAGGGAGGagaGGAGGCCGgGGAGCGg -3' miRNA: 3'- cCCGUCUUUCC---CCUUCGGC-CCUUGCa -5' |
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29066 | 5' | -56.6 | NC_006146.1 | + | 158386 | 0.83 | 0.148706 |
Target: 5'- aGGCAGGGAGGagaGGAGGCCGgGGAGCGg -3' miRNA: 3'- cCCGUCUUUCC---CCUUCGGC-CCUUGCa -5' |
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29066 | 5' | -56.6 | NC_006146.1 | + | 155307 | 0.83 | 0.148706 |
Target: 5'- aGGCAGGGAGGagaGGAGGCCGgGGAGCGg -3' miRNA: 3'- cCCGUCUUUCC---CCUUCGGC-CCUUGCa -5' |
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29066 | 5' | -56.6 | NC_006146.1 | + | 152229 | 0.83 | 0.148706 |
Target: 5'- aGGCAGGGAGGagaGGAGGCCGgGGAGCGg -3' miRNA: 3'- cCCGUCUUUCC---CCUUCGGC-CCUUGCa -5' |
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29066 | 5' | -56.6 | NC_006146.1 | + | 149151 | 0.83 | 0.148706 |
Target: 5'- aGGCAGGGAGGagaGGAGGCCGgGGAGCGg -3' miRNA: 3'- cCCGUCUUUCC---CCUUCGGC-CCUUGCa -5' |
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29066 | 5' | -56.6 | NC_006146.1 | + | 146073 | 0.83 | 0.148706 |
Target: 5'- aGGCAGGGAGGagaGGAGGCCGgGGAGCGg -3' miRNA: 3'- cCCGUCUUUCC---CCUUCGGC-CCUUGCa -5' |
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29066 | 5' | -56.6 | NC_006146.1 | + | 166869 | 0.81 | 0.21571 |
Target: 5'- cGGCGGGAGGGGGGAGCgGagggcgaggaGGAGCGUg -3' miRNA: 3'- cCCGUCUUUCCCCUUCGgC----------CCUUGCA- -5' |
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29066 | 5' | -56.6 | NC_006146.1 | + | 55015 | 0.79 | 0.280055 |
Target: 5'- cGGGCGGGAuGGGGGcGGgCGGGAugGg -3' miRNA: 3'- -CCCGUCUU-UCCCCuUCgGCCCUugCa -5' |
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29066 | 5' | -56.6 | NC_006146.1 | + | 3788 | 0.78 | 0.293276 |
Target: 5'- gGGGgGGggGGGGGggGCacgcgGGGGAUGg -3' miRNA: 3'- -CCCgUCuuUCCCCuuCGg----CCCUUGCa -5' |
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29066 | 5' | -56.6 | NC_006146.1 | + | 137379 | 0.78 | 0.314013 |
Target: 5'- cGGGCAcaaccuAGGGaGGGAGGCCGGGAGgGUg -3' miRNA: 3'- -CCCGUc-----UUUC-CCCUUCGGCCCUUgCA- -5' |
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29066 | 5' | -56.6 | NC_006146.1 | + | 167621 | 0.78 | 0.316861 |
Target: 5'- gGGGCGGAGGGGGGGgucccgcggggcccGGCgcgugccgggggccCGGGGGCGUg -3' miRNA: 3'- -CCCGUCUUUCCCCU--------------UCG--------------GCCCUUGCA- -5' |
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29066 | 5' | -56.6 | NC_006146.1 | + | 169485 | 0.78 | 0.32189 |
Target: 5'- gGGGCGGAGGGGGGGgucccgcggggcccGGCgcgugccgggggaccCGGGGGCGUg -3' miRNA: 3'- -CCCGUCUUUCCCCU--------------UCG---------------GCCCUUGCA- -5' |
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29066 | 5' | -56.6 | NC_006146.1 | + | 170416 | 0.78 | 0.32189 |
Target: 5'- gGGGCGGAGGGGGGGgucccgcggggcccGGCgcgugccgggggaccCGGGGGCGUg -3' miRNA: 3'- -CCCGUCUUUCCCCU--------------UCG---------------GCCCUUGCA- -5' |
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29066 | 5' | -56.6 | NC_006146.1 | + | 168553 | 0.78 | 0.32189 |
Target: 5'- gGGGCGGAGGGGGGGgucccgcggggcccGGCgcgugccgggggaccCGGGGGCGUg -3' miRNA: 3'- -CCCGUCUUUCCCCU--------------UCG---------------GCCCUUGCA- -5' |
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29066 | 5' | -56.6 | NC_006146.1 | + | 170092 | 0.77 | 0.326248 |
Target: 5'- cGGCGGGAggggccggcgccgcAGGGGggGCCGgcGGGGCGUc -3' miRNA: 3'- cCCGUCUU--------------UCCCCuuCGGC--CCUUGCA- -5' |
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29066 | 5' | -56.6 | NC_006146.1 | + | 168228 | 0.77 | 0.331388 |
Target: 5'- cGGCGGGAggggccggcgccugcAGGGGggGCCGgcGGGGCGUc -3' miRNA: 3'- cCCGUCUU---------------UCCCCuuCGGC--CCUUGCA- -5' |
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29066 | 5' | -56.6 | NC_006146.1 | + | 167296 | 0.77 | 0.331388 |
Target: 5'- cGGCGGGAggggccggcgccugcAGGGGggGCCGgcGGGGCGUc -3' miRNA: 3'- cCCGUCUU---------------UCCCCuuCGGC--CCUUGCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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