miRNA display CGI


Results 21 - 40 of 229 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29066 5' -56.6 NC_006146.1 + 24191 0.66 0.906448
Target:  5'- aGGGCAGAgGAGGGcugggccugcGAgguucuguuggGGCCGGGGcCGc -3'
miRNA:   3'- -CCCGUCU-UUCCC----------CU-----------UCGGCCCUuGCa -5'
29066 5' -56.6 NC_006146.1 + 85377 0.66 0.900253
Target:  5'- cGGUGGAGAcGccaGAAGCCGGGAccgGCGUg -3'
miRNA:   3'- cCCGUCUUUcCc--CUUCGGCCCU---UGCA- -5'
29066 5' -56.6 NC_006146.1 + 153538 0.66 0.900253
Target:  5'- gGGGCGu---GGGGcuGCuUGGGAACGg -3'
miRNA:   3'- -CCCGUcuuuCCCCuuCG-GCCCUUGCa -5'
29066 5' -56.6 NC_006146.1 + 33651 0.66 0.900253
Target:  5'- gGGGgAGGGAGGGGuguGGuccCCGGGAc--- -3'
miRNA:   3'- -CCCgUCUUUCCCCu--UC---GGCCCUugca -5'
29066 5' -56.6 NC_006146.1 + 64248 0.66 0.900253
Target:  5'- gGGGCGGGAGGGGcGuGGCUcgcuccgaacauGGGuAAUGUu -3'
miRNA:   3'- -CCCGUCUUUCCC-CuUCGG------------CCC-UUGCA- -5'
29066 5' -56.6 NC_006146.1 + 115044 0.66 0.900253
Target:  5'- gGGaGUAGGAGGaGGaGggGaaGGGGGCGa -3'
miRNA:   3'- -CC-CGUCUUUC-CC-CuuCggCCCUUGCa -5'
29066 5' -56.6 NC_006146.1 + 67133 0.66 0.900253
Target:  5'- uGGCAGA----GGAAGaCCGGGAGCc- -3'
miRNA:   3'- cCCGUCUuuccCCUUC-GGCCCUUGca -5'
29066 5' -56.6 NC_006146.1 + 169366 0.66 0.893831
Target:  5'- cGGgGGAGAGGGGGcagggcuggcGCCGGGccGCGc -3'
miRNA:   3'- cCCgUCUUUCCCCUu---------CGGCCCu-UGCa -5'
29066 5' -56.6 NC_006146.1 + 170297 0.66 0.893831
Target:  5'- cGGgGGAGAGGGGGcagggcuggcGCCGGGccGCGc -3'
miRNA:   3'- cCCgUCUUUCCCCUu---------CGGCCCu-UGCa -5'
29066 5' -56.6 NC_006146.1 + 1209 0.66 0.893831
Target:  5'- aGGgGGAGcccGGGAAGacCCGGGGGCGg -3'
miRNA:   3'- cCCgUCUUuc-CCCUUC--GGCCCUUGCa -5'
29066 5' -56.6 NC_006146.1 + 90078 0.66 0.893831
Target:  5'- aGGCGGugcAGGGGGGAGCaguggaGGcAGCGg -3'
miRNA:   3'- cCCGUCu--UUCCCCUUCGg-----CCcUUGCa -5'
29066 5' -56.6 NC_006146.1 + 278 0.66 0.893831
Target:  5'- aGGgGGAGcccGGGAAGacCCGGGGGCGg -3'
miRNA:   3'- cCCgUCUUuc-CCCUUC--GGCCCUUGCa -5'
29066 5' -56.6 NC_006146.1 + 2141 0.66 0.893831
Target:  5'- aGGgGGAGcccGGGAAGacCCGGGGGCGg -3'
miRNA:   3'- cCCgUCUUuc-CCCUUC--GGCCCUUGCa -5'
29066 5' -56.6 NC_006146.1 + 3073 0.66 0.893831
Target:  5'- aGGgGGAGcccGGGAAGacCCGGGGGCGg -3'
miRNA:   3'- cCCgUCUUuc-CCCUUC--GGCCCUUGCa -5'
29066 5' -56.6 NC_006146.1 + 167502 0.66 0.893831
Target:  5'- cGGgGGAGAGGGGGcagggcuggcGCCGGGccGCGc -3'
miRNA:   3'- cCCgUCUUUCCCCUu---------CGGCCCu-UGCa -5'
29066 5' -56.6 NC_006146.1 + 168434 0.66 0.893831
Target:  5'- cGGgGGAGAGGGGGcagggcuggcGCCGGGccGCGc -3'
miRNA:   3'- cCCgUCUUUCCCCUu---------CGGCCCu-UGCa -5'
29066 5' -56.6 NC_006146.1 + 147710 0.66 0.887187
Target:  5'- aGGGcCAGGAAGGcGGcgGGGCCuGGGuaauAGCGg -3'
miRNA:   3'- -CCC-GUCUUUCC-CC--UUCGG-CCC----UUGCa -5'
29066 5' -56.6 NC_006146.1 + 127961 0.66 0.887187
Target:  5'- gGGGCGGAGGGcaGGGA--CCGGGAc--- -3'
miRNA:   3'- -CCCGUCUUUC--CCCUucGGCCCUugca -5'
29066 5' -56.6 NC_006146.1 + 8944 0.66 0.887187
Target:  5'- gGGGCGuugcccGAAA-GGGAAGCCGGGu---- -3'
miRNA:   3'- -CCCGU------CUUUcCCCUUCGGCCCuugca -5'
29066 5' -56.6 NC_006146.1 + 44012 0.66 0.885151
Target:  5'- aGGUGGAuguGGGGaGGgucuuuuggcucaaAGCCGGGAACu- -3'
miRNA:   3'- cCCGUCUu--UCCC-CU--------------UCGGCCCUUGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.