miRNA display CGI


Results 1 - 20 of 229 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29066 5' -56.6 NC_006146.1 + 10 0.84 0.13434
Target:  5'- aGGGgGGAGGGGGGGuugaggGGCCGGGAugGa -3'
miRNA:   3'- -CCCgUCUUUCCCCU------UCGGCCCUugCa -5'
29066 5' -56.6 NC_006146.1 + 278 0.66 0.893831
Target:  5'- aGGgGGAGcccGGGAAGacCCGGGGGCGg -3'
miRNA:   3'- cCCgUCUUuc-CCCUUC--GGCCCUUGCa -5'
29066 5' -56.6 NC_006146.1 + 570 0.68 0.842891
Target:  5'- uGGCcucccaGGAGAGGG---GCCGGGGGCGc -3'
miRNA:   3'- cCCG------UCUUUCCCcuuCGGCCCUUGCa -5'
29066 5' -56.6 NC_006146.1 + 888 0.69 0.777416
Target:  5'- gGGaGCAGAcGGGGGAAGgccgcgcgccgccccCCGGGAccccggGCGc -3'
miRNA:   3'- -CC-CGUCUuUCCCCUUC---------------GGCCCU------UGCa -5'
29066 5' -56.6 NC_006146.1 + 1209 0.66 0.893831
Target:  5'- aGGgGGAGcccGGGAAGacCCGGGGGCGg -3'
miRNA:   3'- cCCgUCUUuc-CCCUUC--GGCCCUUGCa -5'
29066 5' -56.6 NC_006146.1 + 1501 0.68 0.842891
Target:  5'- uGGCcucccaGGAGAGGG---GCCGGGGGCGc -3'
miRNA:   3'- cCCG------UCUUUCCCcuuCGGCCCUUGCa -5'
29066 5' -56.6 NC_006146.1 + 1820 0.69 0.777416
Target:  5'- gGGaGCAGAcGGGGGAAGgccgcgcgccgccccCCGGGAccccggGCGc -3'
miRNA:   3'- -CC-CGUCUuUCCCCUUC---------------GGCCCU------UGCa -5'
29066 5' -56.6 NC_006146.1 + 2141 0.66 0.893831
Target:  5'- aGGgGGAGcccGGGAAGacCCGGGGGCGg -3'
miRNA:   3'- cCCgUCUUuc-CCCUUC--GGCCCUUGCa -5'
29066 5' -56.6 NC_006146.1 + 2433 0.68 0.842891
Target:  5'- uGGCcucccaGGAGAGGG---GCCGGGGGCGc -3'
miRNA:   3'- cCCG------UCUUUCCCcuuCGGCCCUUGCa -5'
29066 5' -56.6 NC_006146.1 + 2752 0.69 0.777416
Target:  5'- gGGaGCAGAcGGGGGAAGgccgcgcgccgccccCCGGGAccccggGCGc -3'
miRNA:   3'- -CC-CGUCUuUCCCCUUC---------------GGCCCU------UGCa -5'
29066 5' -56.6 NC_006146.1 + 3073 0.66 0.893831
Target:  5'- aGGgGGAGcccGGGAAGacCCGGGGGCGg -3'
miRNA:   3'- cCCgUCUUuc-CCCUUC--GGCCCUUGCa -5'
29066 5' -56.6 NC_006146.1 + 3248 0.74 0.517191
Target:  5'- gGGGgGGAuAGGGGAc-CUGGGGACGg -3'
miRNA:   3'- -CCCgUCUuUCCCCUucGGCCCUUGCa -5'
29066 5' -56.6 NC_006146.1 + 3365 0.68 0.842891
Target:  5'- uGGCcucccaGGAGAGGG---GCCGGGGGCGc -3'
miRNA:   3'- cCCG------UCUUUCCCcuuCGGCCCUUGCa -5'
29066 5' -56.6 NC_006146.1 + 3684 0.69 0.777416
Target:  5'- gGGaGCAGAcGGGGGAAGgccgcgcgccgccccCCGGGAccccggGCGc -3'
miRNA:   3'- -CC-CGUCUuUCCCCUUC---------------GGCCCU------UGCa -5'
29066 5' -56.6 NC_006146.1 + 3788 0.78 0.293276
Target:  5'- gGGGgGGggGGGGGggGCacgcgGGGGAUGg -3'
miRNA:   3'- -CCCgUCuuUCCCCuuCGg----CCCUUGCa -5'
29066 5' -56.6 NC_006146.1 + 7916 0.67 0.880324
Target:  5'- aGGCcgaggAGAAGGGGGAc-CCGGGAAa-- -3'
miRNA:   3'- cCCG-----UCUUUCCCCUucGGCCCUUgca -5'
29066 5' -56.6 NC_006146.1 + 8262 0.68 0.809563
Target:  5'- -aGUAGGGAGGGGGA---GGGAGCGUg -3'
miRNA:   3'- ccCGUCUUUCCCCUUcggCCCUUGCA- -5'
29066 5' -56.6 NC_006146.1 + 8944 0.66 0.887187
Target:  5'- gGGGCGuugcccGAAA-GGGAAGCCGGGu---- -3'
miRNA:   3'- -CCCGU------CUUUcCCCUUCGGCCCuugca -5'
29066 5' -56.6 NC_006146.1 + 10663 0.7 0.726251
Target:  5'- -uGUGGGAcGGGGAGGCCcGGGGCGa -3'
miRNA:   3'- ccCGUCUUuCCCCUUCGGcCCUUGCa -5'
29066 5' -56.6 NC_006146.1 + 11804 0.67 0.858466
Target:  5'- gGGGCuGGggacccugcagGAGGGGAAGgUGGGAccccuuGCGc -3'
miRNA:   3'- -CCCGuCU-----------UUCCCCUUCgGCCCU------UGCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.