miRNA display CGI


Results 1 - 20 of 229 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29066 5' -56.6 NC_006146.1 + 99511 1.1 0.002696
Target:  5'- uGGGCAGAAAGGGGAAGCCGGGAACGUa -3'
miRNA:   3'- -CCCGUCUUUCCCCUUCGGCCCUUGCA- -5'
29066 5' -56.6 NC_006146.1 + 169244 0.74 0.479231
Target:  5'- gGGGCuGAGGGGGcucccgagggcGggGCCGGGGccugGCGg -3'
miRNA:   3'- -CCCGuCUUUCCC-----------CuuCGGCCCU----UGCa -5'
29066 5' -56.6 NC_006146.1 + 3248 0.74 0.517191
Target:  5'- gGGGgGGAuAGGGGAc-CUGGGGACGg -3'
miRNA:   3'- -CCCgUCUuUCCCCUucGGCCCUUGCa -5'
29066 5' -56.6 NC_006146.1 + 127069 0.66 0.917588
Target:  5'- uGGCGGcgc-GGGAAGCCGaaagggccagggcGGAGCGg -3'
miRNA:   3'- cCCGUCuuucCCCUUCGGC-------------CCUUGCa -5'
29066 5' -56.6 NC_006146.1 + 167621 0.78 0.316861
Target:  5'- gGGGCGGAGGGGGGGgucccgcggggcccGGCgcgugccgggggccCGGGGGCGUg -3'
miRNA:   3'- -CCCGUCUUUCCCCU--------------UCG--------------GCCCUUGCA- -5'
29066 5' -56.6 NC_006146.1 + 168553 0.78 0.32189
Target:  5'- gGGGCGGAGGGGGGGgucccgcggggcccGGCgcgugccgggggaccCGGGGGCGUg -3'
miRNA:   3'- -CCCGUCUUUCCCCU--------------UCG---------------GCCCUUGCA- -5'
29066 5' -56.6 NC_006146.1 + 170416 0.78 0.32189
Target:  5'- gGGGCGGAGGGGGGGgucccgcggggcccGGCgcgugccgggggaccCGGGGGCGUg -3'
miRNA:   3'- -CCCGUCUUUCCCCU--------------UCG---------------GCCCUUGCA- -5'
29066 5' -56.6 NC_006146.1 + 170092 0.77 0.326248
Target:  5'- cGGCGGGAggggccggcgccgcAGGGGggGCCGgcGGGGCGUc -3'
miRNA:   3'- cCCGUCUU--------------UCCCCuuCGGC--CCUUGCA- -5'
29066 5' -56.6 NC_006146.1 + 169160 0.77 0.331388
Target:  5'- cGGCGGGAggggccggcgccugcAGGGGggGCCGgcGGGGCGUc -3'
miRNA:   3'- cCCGUCUU---------------UCCCCuuCGGC--CCUUGCA- -5'
29066 5' -56.6 NC_006146.1 + 168312 0.74 0.479231
Target:  5'- gGGGCuGAGGGGGcucccgagggcGggGCCGGGGccugGCGg -3'
miRNA:   3'- -CCCGuCUUUCCC-----------CuuCGGCCCU----UGCa -5'
29066 5' -56.6 NC_006146.1 + 56249 0.76 0.390971
Target:  5'- gGGGCGGAGGcGGGGccguccucGGCgGGGAGCGa -3'
miRNA:   3'- -CCCGUCUUU-CCCCu-------UCGgCCCUUGCa -5'
29066 5' -56.6 NC_006146.1 + 168228 0.77 0.331388
Target:  5'- cGGCGGGAggggccggcgccugcAGGGGggGCCGgcGGGGCGUc -3'
miRNA:   3'- cCCGUCUU---------------UCCCCuuCGGC--CCUUGCA- -5'
29066 5' -56.6 NC_006146.1 + 10 0.84 0.13434
Target:  5'- aGGGgGGAGGGGGGGuugaggGGCCGGGAugGa -3'
miRNA:   3'- -CCCgUCUUUCCCCU------UCGGCCCUugCa -5'
29066 5' -56.6 NC_006146.1 + 93890 0.74 0.469954
Target:  5'- gGGGCGGAAuuugcggcAGGGGggGCCagcacGGAgGCGUa -3'
miRNA:   3'- -CCCGUCUU--------UCCCCuuCGGc----CCU-UGCA- -5'
29066 5' -56.6 NC_006146.1 + 166869 0.81 0.21571
Target:  5'- cGGCGGGAGGGGGGAGCgGagggcgaggaGGAGCGUg -3'
miRNA:   3'- cCCGUCUUUCCCCUUCGgC----------CCUUGCA- -5'
29066 5' -56.6 NC_006146.1 + 167296 0.77 0.331388
Target:  5'- cGGCGGGAggggccggcgccugcAGGGGggGCCGgcGGGGCGUc -3'
miRNA:   3'- cCCGUCUU---------------UCCCCuuCGGC--CCUUGCA- -5'
29066 5' -56.6 NC_006146.1 + 167380 0.74 0.479231
Target:  5'- gGGGCuGAGGGGGcucccgagggcGggGCCGGGGccugGCGg -3'
miRNA:   3'- -CCCGuCUUUCCC-----------CuuCGGCCCU----UGCa -5'
29066 5' -56.6 NC_006146.1 + 170175 0.74 0.479231
Target:  5'- gGGGCuGAGGGGGcucccgagggcGggGCCGGGGccugGCGg -3'
miRNA:   3'- -CCCGuCUUUCCC-----------CuuCGGCCCU----UGCa -5'
29066 5' -56.6 NC_006146.1 + 55015 0.79 0.280055
Target:  5'- cGGGCGGGAuGGGGGcGGgCGGGAugGg -3'
miRNA:   3'- -CCCGUCUU-UCCCCuUCgGCCCUugCa -5'
29066 5' -56.6 NC_006146.1 + 169485 0.78 0.32189
Target:  5'- gGGGCGGAGGGGGGGgucccgcggggcccGGCgcgugccgggggaccCGGGGGCGUg -3'
miRNA:   3'- -CCCGUCUUUCCCCU--------------UCG---------------GCCCUUGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.