miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29068 3' -56.4 NC_006146.1 + 61125 0.66 0.923656
Target:  5'- -aUGGAUGUCCAcGUUGAcaaCCaGGUGCUg -3'
miRNA:   3'- acAUCUGCAGGU-CGACUa--GG-CCGCGG- -5'
29068 3' -56.4 NC_006146.1 + 157252 0.66 0.923656
Target:  5'- --aGGugG-CC-GCUGccuguGUCCGGCGCUu -3'
miRNA:   3'- acaUCugCaGGuCGAC-----UAGGCCGCGG- -5'
29068 3' -56.4 NC_006146.1 + 131554 0.66 0.923656
Target:  5'- gGUGGugGgacgCCGGgUGGUuuGGUGaCUg -3'
miRNA:   3'- aCAUCugCa---GGUCgACUAggCCGC-GG- -5'
29068 3' -56.4 NC_006146.1 + 43276 0.66 0.923656
Target:  5'- --aGGGCGgCCuGgaGGUCCGGCagguGCCu -3'
miRNA:   3'- acaUCUGCaGGuCgaCUAGGCCG----CGG- -5'
29068 3' -56.4 NC_006146.1 + 2430 0.66 0.918152
Target:  5'- cGUGGACGUgaGGCcgGAUCUGcGCaCCg -3'
miRNA:   3'- aCAUCUGCAggUCGa-CUAGGC-CGcGG- -5'
29068 3' -56.4 NC_006146.1 + 23733 0.66 0.918151
Target:  5'- --gGGGCG-CCGGuCUGcgCCGcCGCCg -3'
miRNA:   3'- acaUCUGCaGGUC-GACuaGGCcGCGG- -5'
29068 3' -56.4 NC_006146.1 + 13536 0.66 0.912415
Target:  5'- cGUGGACaGgaaCCuGCUGcaggcgCCGGgCGCCg -3'
miRNA:   3'- aCAUCUG-Ca--GGuCGACua----GGCC-GCGG- -5'
29068 3' -56.4 NC_006146.1 + 40861 0.66 0.912415
Target:  5'- -uUGGAgGcCCGGCUcgcGGUCCGGagacggaGCCg -3'
miRNA:   3'- acAUCUgCaGGUCGA---CUAGGCCg------CGG- -5'
29068 3' -56.4 NC_006146.1 + 54614 0.66 0.912415
Target:  5'- --gGGGCGccaUCCGGCcgccucucUGGUCCGGUGgCu -3'
miRNA:   3'- acaUCUGC---AGGUCG--------ACUAGGCCGCgG- -5'
29068 3' -56.4 NC_006146.1 + 168260 0.66 0.911829
Target:  5'- cGgcgGGGCGUCCcgucgucacgcucGGCUGcacgcgcggCGGCGCCg -3'
miRNA:   3'- aCa--UCUGCAGG-------------UCGACuag------GCCGCGG- -5'
29068 3' -56.4 NC_006146.1 + 170123 0.66 0.911829
Target:  5'- cGgcgGGGCGUCCcgucgucacgcucGGCUGcacgcgcggCGGCGCCg -3'
miRNA:   3'- aCa--UCUGCAGG-------------UCGACuag------GCCGCGG- -5'
29068 3' -56.4 NC_006146.1 + 167328 0.66 0.911829
Target:  5'- cGgcgGGGCGUCCcgucgucacgcucGGCUGcacgcgcggCGGCGCCg -3'
miRNA:   3'- aCa--UCUGCAGG-------------UCGACuag------GCCGCGG- -5'
29068 3' -56.4 NC_006146.1 + 169192 0.66 0.911829
Target:  5'- cGgcgGGGCGUCCcgucgucacgcucGGCUGcacgcgcggCGGCGCCg -3'
miRNA:   3'- aCa--UCUGCAGG-------------UCGACuag------GCCGCGG- -5'
29068 3' -56.4 NC_006146.1 + 59805 0.66 0.906448
Target:  5'- --cAGAgcUCCAGCUGAUUgagGGCGUCg -3'
miRNA:   3'- acaUCUgcAGGUCGACUAGg--CCGCGG- -5'
29068 3' -56.4 NC_006146.1 + 26776 0.66 0.906448
Target:  5'- ---cGACGUCCcaGGUUG---CGGCGCCa -3'
miRNA:   3'- acauCUGCAGG--UCGACuagGCCGCGG- -5'
29068 3' -56.4 NC_006146.1 + 51933 0.66 0.900253
Target:  5'- --cGGGCGgccCCGGUgcGGUCUGcGCGCCa -3'
miRNA:   3'- acaUCUGCa--GGUCGa-CUAGGC-CGCGG- -5'
29068 3' -56.4 NC_006146.1 + 123549 0.66 0.900252
Target:  5'- --gAGAcCGUCgCAGaCUGGaaaCGGCGCCu -3'
miRNA:   3'- acaUCU-GCAG-GUC-GACUag-GCCGCGG- -5'
29068 3' -56.4 NC_006146.1 + 170051 0.67 0.893831
Target:  5'- -cUGGAUGUCgGGgaGGgcCCGGgGCCg -3'
miRNA:   3'- acAUCUGCAGgUCgaCUa-GGCCgCGG- -5'
29068 3' -56.4 NC_006146.1 + 112912 0.67 0.893831
Target:  5'- --cGGGCcUCCAGCUcGUCCugguGCGCCu -3'
miRNA:   3'- acaUCUGcAGGUCGAcUAGGc---CGCGG- -5'
29068 3' -56.4 NC_006146.1 + 169119 0.67 0.893831
Target:  5'- -cUGGAUGUCgGGgaGGgcCCGGgGCCg -3'
miRNA:   3'- acAUCUGCAGgUCgaCUa-GGCCgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.