Results 1 - 20 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29068 | 3' | -56.4 | NC_006146.1 | + | 99878 | 1.12 | 0.00205 |
Target: 5'- aUGUAGACGUCCAGCUGAUCCGGCGCCu -3' miRNA: 3'- -ACAUCUGCAGGUCGACUAGGCCGCGG- -5' |
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29068 | 3' | -56.4 | NC_006146.1 | + | 68108 | 0.79 | 0.273624 |
Target: 5'- gGUGGGCGgCCAGCcGGUCCgcggugagcGGCGCCa -3' miRNA: 3'- aCAUCUGCaGGUCGaCUAGG---------CCGCGG- -5' |
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29068 | 3' | -56.4 | NC_006146.1 | + | 33971 | 0.77 | 0.358756 |
Target: 5'- gGgcGugGUCCGcuggguccGCUGGUCCGGUGCa -3' miRNA: 3'- aCauCugCAGGU--------CGACUAGGCCGCGg -5' |
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29068 | 3' | -56.4 | NC_006146.1 | + | 170080 | 0.75 | 0.460768 |
Target: 5'- cGUggGGAUGgCCGGCggGAggggCCGGCGCCg -3' miRNA: 3'- aCA--UCUGCaGGUCGa-CUa---GGCCGCGG- -5' |
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29068 | 3' | -56.4 | NC_006146.1 | + | 160153 | 0.74 | 0.507582 |
Target: 5'- aGUAGAUGUagccgcauggccCCGGCUGGcUCUGGCuGCCc -3' miRNA: 3'- aCAUCUGCA------------GGUCGACU-AGGCCG-CGG- -5' |
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29068 | 3' | -56.4 | NC_006146.1 | + | 168216 | 0.74 | 0.507582 |
Target: 5'- cGUggGGAUGgCCGGCggGAggggCCGGCGCCu -3' miRNA: 3'- aCA--UCUGCaGGUCGa-CUa---GGCCGCGG- -5' |
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29068 | 3' | -56.4 | NC_006146.1 | + | 167284 | 0.74 | 0.507582 |
Target: 5'- cGUggGGAUGgCCGGCggGAggggCCGGCGCCu -3' miRNA: 3'- aCA--UCUGCaGGUCGa-CUa---GGCCGCGG- -5' |
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29068 | 3' | -56.4 | NC_006146.1 | + | 169148 | 0.74 | 0.507582 |
Target: 5'- cGUggGGAUGgCCGGCggGAggggCCGGCGCCu -3' miRNA: 3'- aCA--UCUGCaGGUCGa-CUa---GGCCGCGG- -5' |
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29068 | 3' | -56.4 | NC_006146.1 | + | 60052 | 0.74 | 0.517191 |
Target: 5'- ----aGCGUCCcuCUGAUCgGGCGCCg -3' miRNA: 3'- acaucUGCAGGucGACUAGgCCGCGG- -5' |
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29068 | 3' | -56.4 | NC_006146.1 | + | 57896 | 0.73 | 0.540537 |
Target: 5'- gGUGGAacggcgccuUGUCCAggacaugcagagggcGCUGG-CCGGCGCCg -3' miRNA: 3'- aCAUCU---------GCAGGU---------------CGACUaGGCCGCGG- -5' |
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29068 | 3' | -56.4 | NC_006146.1 | + | 43484 | 0.73 | 0.580172 |
Target: 5'- gGUGGACGUugccguacagauuucCCAGUagGGUCCGG-GCCa -3' miRNA: 3'- aCAUCUGCA---------------GGUCGa-CUAGGCCgCGG- -5' |
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29068 | 3' | -56.4 | NC_006146.1 | + | 74619 | 0.72 | 0.606269 |
Target: 5'- --cAGcACGUgCAGcCUGAUgCGGCGCCc -3' miRNA: 3'- acaUC-UGCAgGUC-GACUAgGCCGCGG- -5' |
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29068 | 3' | -56.4 | NC_006146.1 | + | 97440 | 0.71 | 0.683794 |
Target: 5'- gGUGGAUGgaaccuccucuucuUCCAuGUUGucAUCCGGUGCCa -3' miRNA: 3'- aCAUCUGC--------------AGGU-CGAC--UAGGCCGCGG- -5' |
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29068 | 3' | -56.4 | NC_006146.1 | + | 19569 | 0.71 | 0.686789 |
Target: 5'- gGUGGGCGaCCu-CUcGGUCCGGCGCg -3' miRNA: 3'- aCAUCUGCaGGucGA-CUAGGCCGCGg -5' |
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29068 | 3' | -56.4 | NC_006146.1 | + | 102560 | 0.71 | 0.68679 |
Target: 5'- --gAGGCGUCCAGCagcaGGUCCGa-GCCg -3' miRNA: 3'- acaUCUGCAGGUCGa---CUAGGCcgCGG- -5' |
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29068 | 3' | -56.4 | NC_006146.1 | + | 33155 | 0.7 | 0.706643 |
Target: 5'- gUGgggGGugGcCCGGCUGGgcaCCGccGCGCCg -3' miRNA: 3'- -ACa--UCugCaGGUCGACUa--GGC--CGCGG- -5' |
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29068 | 3' | -56.4 | NC_006146.1 | + | 33279 | 0.7 | 0.706643 |
Target: 5'- gUGgggGGugGcCCGGCUGGgcaCCGcuGCGCCg -3' miRNA: 3'- -ACa--UCugCaGGUCGACUa--GGC--CGCGG- -5' |
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29068 | 3' | -56.4 | NC_006146.1 | + | 84521 | 0.7 | 0.706643 |
Target: 5'- --cGGACGUCguGCcGGUacaGGCGCCg -3' miRNA: 3'- acaUCUGCAGguCGaCUAgg-CCGCGG- -5' |
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29068 | 3' | -56.4 | NC_006146.1 | + | 156031 | 0.7 | 0.726251 |
Target: 5'- cUGUAGuuGUCCAGCUcc-CUGGCuGCCc -3' miRNA: 3'- -ACAUCugCAGGUCGAcuaGGCCG-CGG- -5' |
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29068 | 3' | -56.4 | NC_006146.1 | + | 24364 | 0.7 | 0.735941 |
Target: 5'- aGUAGugGcgcagggCCAGCUccaGggCgCGGCGCCu -3' miRNA: 3'- aCAUCugCa------GGUCGA---CuaG-GCCGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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