miRNA display CGI


Results 21 - 40 of 71 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29068 3' -56.4 NC_006146.1 + 40013 0.7 0.742672
Target:  5'- gUGUGGGCGUagcagggggCCuGCUGGgggccguagccgacUCCGGCGUg -3'
miRNA:   3'- -ACAUCUGCA---------GGuCGACU--------------AGGCCGCGg -5'
29068 3' -56.4 NC_006146.1 + 141520 0.69 0.764449
Target:  5'- aGUGGACGggCCugggaGGCUGGUuCUGGgGCUg -3'
miRNA:   3'- aCAUCUGCa-GG-----UCGACUA-GGCCgCGG- -5'
29068 3' -56.4 NC_006146.1 + 144598 0.69 0.764449
Target:  5'- aGUGGACGggCCugggaGGCUGGUuCUGGgGCUg -3'
miRNA:   3'- aCAUCUGCa-GG-----UCGACUA-GGCCgCGG- -5'
29068 3' -56.4 NC_006146.1 + 150753 0.69 0.764449
Target:  5'- aGUGGACGggCCugggaGGCUGGUuCUGGgGCUg -3'
miRNA:   3'- aCAUCUGCa-GG-----UCGACUA-GGCCgCGG- -5'
29068 3' -56.4 NC_006146.1 + 153831 0.69 0.764449
Target:  5'- aGUGGACGggCCugggaGGCUGGUuCUGGgGCUg -3'
miRNA:   3'- aCAUCUGCa-GG-----UCGACUA-GGCCgCGG- -5'
29068 3' -56.4 NC_006146.1 + 156909 0.69 0.764449
Target:  5'- aGUGGACGggCCugggaGGCUGGUuCUGGgGCUg -3'
miRNA:   3'- aCAUCUGCa-GG-----UCGACUA-GGCCgCGG- -5'
29068 3' -56.4 NC_006146.1 + 128586 0.69 0.791929
Target:  5'- --cGGACGacuacgaCCGGCUGuacuuUCUGGCGCUg -3'
miRNA:   3'- acaUCUGCa------GGUCGACu----AGGCCGCGG- -5'
29068 3' -56.4 NC_006146.1 + 50010 0.69 0.791929
Target:  5'- --gAGGCGaUCCGGUUGAUgcagCCGGgGUCg -3'
miRNA:   3'- acaUCUGC-AGGUCGACUA----GGCCgCGG- -5'
29068 3' -56.4 NC_006146.1 + 114224 0.69 0.791929
Target:  5'- gGUAG-CaGcCCGGC-GAUCCGGCGUUg -3'
miRNA:   3'- aCAUCuG-CaGGUCGaCUAGGCCGCGG- -5'
29068 3' -56.4 NC_006146.1 + 53359 0.69 0.80082
Target:  5'- cGU-GAgGUCUuGGCUGGcCCGGCGCUu -3'
miRNA:   3'- aCAuCUgCAGG-UCGACUaGGCCGCGG- -5'
29068 3' -56.4 NC_006146.1 + 112361 0.68 0.809563
Target:  5'- aUGUAGGcCG-CCAcGCUGA-CCGGcCGCUu -3'
miRNA:   3'- -ACAUCU-GCaGGU-CGACUaGGCC-GCGG- -5'
29068 3' -56.4 NC_006146.1 + 114296 0.68 0.818149
Target:  5'- -aUGGACG-CCGGCgagGAgaCCGGCGgCg -3'
miRNA:   3'- acAUCUGCaGGUCGa--CUa-GGCCGCgG- -5'
29068 3' -56.4 NC_006146.1 + 41414 0.68 0.82657
Target:  5'- cGUAGACGgCCGcGCUGggUgGGCGgCu -3'
miRNA:   3'- aCAUCUGCaGGU-CGACuaGgCCGCgG- -5'
29068 3' -56.4 NC_006146.1 + 71201 0.68 0.826571
Target:  5'- aGUAGAaGUCCAGCgGggCCGuaGCg -3'
miRNA:   3'- aCAUCUgCAGGUCGaCuaGGCcgCGg -5'
29068 3' -56.4 NC_006146.1 + 159952 0.68 0.826571
Target:  5'- cGUAGACGUCCcuguGGUagGAggUGGCGCg -3'
miRNA:   3'- aCAUCUGCAGG----UCGa-CUagGCCGCGg -5'
29068 3' -56.4 NC_006146.1 + 33607 0.68 0.83482
Target:  5'- gGgcGugGUCC-GCgGGUUCGGUGCa -3'
miRNA:   3'- aCauCugCAGGuCGaCUAGGCCGCGg -5'
29068 3' -56.4 NC_006146.1 + 137753 0.68 0.842092
Target:  5'- -cUGGGgGUCCGcucguccGCUGGUCCGGUccggguggGCCu -3'
miRNA:   3'- acAUCUgCAGGU-------CGACUAGGCCG--------CGG- -5'
29068 3' -56.4 NC_006146.1 + 40973 0.68 0.84289
Target:  5'- cGUAGAcCG-CCGugguGCcGcgCCGGCGCCc -3'
miRNA:   3'- aCAUCU-GCaGGU----CGaCuaGGCCGCGG- -5'
29068 3' -56.4 NC_006146.1 + 137812 0.68 0.842891
Target:  5'- --cGGGgGUCC-GCcGGUCCGGUGCa -3'
miRNA:   3'- acaUCUgCAGGuCGaCUAGGCCGCGg -5'
29068 3' -56.4 NC_006146.1 + 47325 0.68 0.842891
Target:  5'- -cUGGAUGauggccUCCAGCcGggCCaGGCGCCg -3'
miRNA:   3'- acAUCUGC------AGGUCGaCuaGG-CCGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.