miRNA display CGI


Results 41 - 60 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29068 3' -56.4 NC_006146.1 + 56751 0.68 0.850775
Target:  5'- --gGGACGUCCGGggcCUGAUCgCGGaGCa -3'
miRNA:   3'- acaUCUGCAGGUC---GACUAG-GCCgCGg -5'
29068 3' -56.4 NC_006146.1 + 56228 0.67 0.85618
Target:  5'- --gAGcCGUCCAGCgGGUCCgcgggggcggaggcGGgGCCg -3'
miRNA:   3'- acaUCuGCAGGUCGaCUAGG--------------CCgCGG- -5'
29068 3' -56.4 NC_006146.1 + 48345 0.67 0.858466
Target:  5'- --cAGGCGUCCAGuCUGG-CCaGCggGCCg -3'
miRNA:   3'- acaUCUGCAGGUC-GACUaGGcCG--CGG- -5'
29068 3' -56.4 NC_006146.1 + 149409 0.67 0.865959
Target:  5'- gGUAGACGgCCAGgUGAggcaUCUgGGUGCUc -3'
miRNA:   3'- aCAUCUGCaGGUCgACU----AGG-CCGCGG- -5'
29068 3' -56.4 NC_006146.1 + 98320 0.67 0.873246
Target:  5'- cGUGGcCGUCUGGCacgGggCCGGgCGCg -3'
miRNA:   3'- aCAUCuGCAGGUCGa--CuaGGCC-GCGg -5'
29068 3' -56.4 NC_006146.1 + 33237 0.67 0.880324
Target:  5'- gGUGGcCG-CCGGCgGGUCCGccGgGCCg -3'
miRNA:   3'- aCAUCuGCaGGUCGaCUAGGC--CgCGG- -5'
29068 3' -56.4 NC_006146.1 + 121146 0.67 0.887187
Target:  5'- ---cGGCGUCUGGgcCUGggCCGcGCGCCc -3'
miRNA:   3'- acauCUGCAGGUC--GACuaGGC-CGCGG- -5'
29068 3' -56.4 NC_006146.1 + 168187 0.67 0.893831
Target:  5'- -cUGGAUGUCgGGgaGGgcCCGGgGCCg -3'
miRNA:   3'- acAUCUGCAGgUCgaCUa-GGCCgCGG- -5'
29068 3' -56.4 NC_006146.1 + 167255 0.67 0.893831
Target:  5'- -cUGGAUGUCgGGgaGGgcCCGGgGCCg -3'
miRNA:   3'- acAUCUGCAGgUCgaCUa-GGCCgCGG- -5'
29068 3' -56.4 NC_006146.1 + 170051 0.67 0.893831
Target:  5'- -cUGGAUGUCgGGgaGGgcCCGGgGCCg -3'
miRNA:   3'- acAUCUGCAGgUCgaCUa-GGCCgCGG- -5'
29068 3' -56.4 NC_006146.1 + 169119 0.67 0.893831
Target:  5'- -cUGGAUGUCgGGgaGGgcCCGGgGCCg -3'
miRNA:   3'- acAUCUGCAGgUCgaCUa-GGCCgCGG- -5'
29068 3' -56.4 NC_006146.1 + 112912 0.67 0.893831
Target:  5'- --cGGGCcUCCAGCUcGUCCugguGCGCCu -3'
miRNA:   3'- acaUCUGcAGGUCGAcUAGGc---CGCGG- -5'
29068 3' -56.4 NC_006146.1 + 20328 0.67 0.893831
Target:  5'- gUGcUGGACGauggCCAGCaGAUCCGcGUGUUc -3'
miRNA:   3'- -AC-AUCUGCa---GGUCGaCUAGGC-CGCGG- -5'
29068 3' -56.4 NC_006146.1 + 42695 0.67 0.893831
Target:  5'- --aAGAgCGUCUGGC----CCGGCGCCg -3'
miRNA:   3'- acaUCU-GCAGGUCGacuaGGCCGCGG- -5'
29068 3' -56.4 NC_006146.1 + 123549 0.66 0.900252
Target:  5'- --gAGAcCGUCgCAGaCUGGaaaCGGCGCCu -3'
miRNA:   3'- acaUCU-GCAG-GUC-GACUag-GCCGCGG- -5'
29068 3' -56.4 NC_006146.1 + 51933 0.66 0.900253
Target:  5'- --cGGGCGgccCCGGUgcGGUCUGcGCGCCa -3'
miRNA:   3'- acaUCUGCa--GGUCGa-CUAGGC-CGCGG- -5'
29068 3' -56.4 NC_006146.1 + 26776 0.66 0.906448
Target:  5'- ---cGACGUCCcaGGUUG---CGGCGCCa -3'
miRNA:   3'- acauCUGCAGG--UCGACuagGCCGCGG- -5'
29068 3' -56.4 NC_006146.1 + 59805 0.66 0.906448
Target:  5'- --cAGAgcUCCAGCUGAUUgagGGCGUCg -3'
miRNA:   3'- acaUCUgcAGGUCGACUAGg--CCGCGG- -5'
29068 3' -56.4 NC_006146.1 + 168260 0.66 0.911829
Target:  5'- cGgcgGGGCGUCCcgucgucacgcucGGCUGcacgcgcggCGGCGCCg -3'
miRNA:   3'- aCa--UCUGCAGG-------------UCGACuag------GCCGCGG- -5'
29068 3' -56.4 NC_006146.1 + 167328 0.66 0.911829
Target:  5'- cGgcgGGGCGUCCcgucgucacgcucGGCUGcacgcgcggCGGCGCCg -3'
miRNA:   3'- aCa--UCUGCAGG-------------UCGACuag------GCCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.