Results 21 - 40 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29068 | 3' | -56.4 | NC_006146.1 | + | 170051 | 0.67 | 0.893831 |
Target: 5'- -cUGGAUGUCgGGgaGGgcCCGGgGCCg -3' miRNA: 3'- acAUCUGCAGgUCgaCUa-GGCCgCGG- -5' |
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29068 | 3' | -56.4 | NC_006146.1 | + | 112912 | 0.67 | 0.893831 |
Target: 5'- --cGGGCcUCCAGCUcGUCCugguGCGCCu -3' miRNA: 3'- acaUCUGcAGGUCGAcUAGGc---CGCGG- -5' |
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29068 | 3' | -56.4 | NC_006146.1 | + | 42695 | 0.67 | 0.893831 |
Target: 5'- --aAGAgCGUCUGGC----CCGGCGCCg -3' miRNA: 3'- acaUCU-GCAGGUCGacuaGGCCGCGG- -5' |
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29068 | 3' | -56.4 | NC_006146.1 | + | 20328 | 0.67 | 0.893831 |
Target: 5'- gUGcUGGACGauggCCAGCaGAUCCGcGUGUUc -3' miRNA: 3'- -AC-AUCUGCa---GGUCGaCUAGGC-CGCGG- -5' |
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29068 | 3' | -56.4 | NC_006146.1 | + | 121146 | 0.67 | 0.887187 |
Target: 5'- ---cGGCGUCUGGgcCUGggCCGcGCGCCc -3' miRNA: 3'- acauCUGCAGGUC--GACuaGGC-CGCGG- -5' |
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29068 | 3' | -56.4 | NC_006146.1 | + | 33237 | 0.67 | 0.880324 |
Target: 5'- gGUGGcCG-CCGGCgGGUCCGccGgGCCg -3' miRNA: 3'- aCAUCuGCaGGUCGaCUAGGC--CgCGG- -5' |
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29068 | 3' | -56.4 | NC_006146.1 | + | 98320 | 0.67 | 0.873246 |
Target: 5'- cGUGGcCGUCUGGCacgGggCCGGgCGCg -3' miRNA: 3'- aCAUCuGCAGGUCGa--CuaGGCC-GCGg -5' |
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29068 | 3' | -56.4 | NC_006146.1 | + | 149409 | 0.67 | 0.865959 |
Target: 5'- gGUAGACGgCCAGgUGAggcaUCUgGGUGCUc -3' miRNA: 3'- aCAUCUGCaGGUCgACU----AGG-CCGCGG- -5' |
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29068 | 3' | -56.4 | NC_006146.1 | + | 48345 | 0.67 | 0.858466 |
Target: 5'- --cAGGCGUCCAGuCUGG-CCaGCggGCCg -3' miRNA: 3'- acaUCUGCAGGUC-GACUaGGcCG--CGG- -5' |
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29068 | 3' | -56.4 | NC_006146.1 | + | 56228 | 0.67 | 0.85618 |
Target: 5'- --gAGcCGUCCAGCgGGUCCgcgggggcggaggcGGgGCCg -3' miRNA: 3'- acaUCuGCAGGUCGaCUAGG--------------CCgCGG- -5' |
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29068 | 3' | -56.4 | NC_006146.1 | + | 56751 | 0.68 | 0.850775 |
Target: 5'- --gGGACGUCCGGggcCUGAUCgCGGaGCa -3' miRNA: 3'- acaUCUGCAGGUC---GACUAG-GCCgCGg -5' |
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29068 | 3' | -56.4 | NC_006146.1 | + | 47325 | 0.68 | 0.842891 |
Target: 5'- -cUGGAUGauggccUCCAGCcGggCCaGGCGCCg -3' miRNA: 3'- acAUCUGC------AGGUCGaCuaGG-CCGCGG- -5' |
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29068 | 3' | -56.4 | NC_006146.1 | + | 137812 | 0.68 | 0.842891 |
Target: 5'- --cGGGgGUCC-GCcGGUCCGGUGCa -3' miRNA: 3'- acaUCUgCAGGuCGaCUAGGCCGCGg -5' |
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29068 | 3' | -56.4 | NC_006146.1 | + | 40973 | 0.68 | 0.84289 |
Target: 5'- cGUAGAcCG-CCGugguGCcGcgCCGGCGCCc -3' miRNA: 3'- aCAUCU-GCaGGU----CGaCuaGGCCGCGG- -5' |
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29068 | 3' | -56.4 | NC_006146.1 | + | 137753 | 0.68 | 0.842092 |
Target: 5'- -cUGGGgGUCCGcucguccGCUGGUCCGGUccggguggGCCu -3' miRNA: 3'- acAUCUgCAGGU-------CGACUAGGCCG--------CGG- -5' |
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29068 | 3' | -56.4 | NC_006146.1 | + | 33607 | 0.68 | 0.83482 |
Target: 5'- gGgcGugGUCC-GCgGGUUCGGUGCa -3' miRNA: 3'- aCauCugCAGGuCGaCUAGGCCGCGg -5' |
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29068 | 3' | -56.4 | NC_006146.1 | + | 159952 | 0.68 | 0.826571 |
Target: 5'- cGUAGACGUCCcuguGGUagGAggUGGCGCg -3' miRNA: 3'- aCAUCUGCAGG----UCGa-CUagGCCGCGg -5' |
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29068 | 3' | -56.4 | NC_006146.1 | + | 71201 | 0.68 | 0.826571 |
Target: 5'- aGUAGAaGUCCAGCgGggCCGuaGCg -3' miRNA: 3'- aCAUCUgCAGGUCGaCuaGGCcgCGg -5' |
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29068 | 3' | -56.4 | NC_006146.1 | + | 41414 | 0.68 | 0.82657 |
Target: 5'- cGUAGACGgCCGcGCUGggUgGGCGgCu -3' miRNA: 3'- aCAUCUGCaGGU-CGACuaGgCCGCgG- -5' |
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29068 | 3' | -56.4 | NC_006146.1 | + | 114296 | 0.68 | 0.818149 |
Target: 5'- -aUGGACG-CCGGCgagGAgaCCGGCGgCg -3' miRNA: 3'- acAUCUGCaGGUCGa--CUa-GGCCGCgG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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