miRNA display CGI


Results 41 - 60 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29068 3' -56.4 NC_006146.1 + 112361 0.68 0.809563
Target:  5'- aUGUAGGcCG-CCAcGCUGA-CCGGcCGCUu -3'
miRNA:   3'- -ACAUCU-GCaGGU-CGACUaGGCC-GCGG- -5'
29068 3' -56.4 NC_006146.1 + 53359 0.69 0.80082
Target:  5'- cGU-GAgGUCUuGGCUGGcCCGGCGCUu -3'
miRNA:   3'- aCAuCUgCAGG-UCGACUaGGCCGCGG- -5'
29068 3' -56.4 NC_006146.1 + 50010 0.69 0.791929
Target:  5'- --gAGGCGaUCCGGUUGAUgcagCCGGgGUCg -3'
miRNA:   3'- acaUCUGC-AGGUCGACUA----GGCCgCGG- -5'
29068 3' -56.4 NC_006146.1 + 128586 0.69 0.791929
Target:  5'- --cGGACGacuacgaCCGGCUGuacuuUCUGGCGCUg -3'
miRNA:   3'- acaUCUGCa------GGUCGACu----AGGCCGCGG- -5'
29068 3' -56.4 NC_006146.1 + 114224 0.69 0.791929
Target:  5'- gGUAG-CaGcCCGGC-GAUCCGGCGUUg -3'
miRNA:   3'- aCAUCuG-CaGGUCGaCUAGGCCGCGG- -5'
29068 3' -56.4 NC_006146.1 + 141520 0.69 0.764449
Target:  5'- aGUGGACGggCCugggaGGCUGGUuCUGGgGCUg -3'
miRNA:   3'- aCAUCUGCa-GG-----UCGACUA-GGCCgCGG- -5'
29068 3' -56.4 NC_006146.1 + 144598 0.69 0.764449
Target:  5'- aGUGGACGggCCugggaGGCUGGUuCUGGgGCUg -3'
miRNA:   3'- aCAUCUGCa-GG-----UCGACUA-GGCCgCGG- -5'
29068 3' -56.4 NC_006146.1 + 150753 0.69 0.764449
Target:  5'- aGUGGACGggCCugggaGGCUGGUuCUGGgGCUg -3'
miRNA:   3'- aCAUCUGCa-GG-----UCGACUA-GGCCgCGG- -5'
29068 3' -56.4 NC_006146.1 + 153831 0.69 0.764449
Target:  5'- aGUGGACGggCCugggaGGCUGGUuCUGGgGCUg -3'
miRNA:   3'- aCAUCUGCa-GG-----UCGACUA-GGCCgCGG- -5'
29068 3' -56.4 NC_006146.1 + 156909 0.69 0.764449
Target:  5'- aGUGGACGggCCugggaGGCUGGUuCUGGgGCUg -3'
miRNA:   3'- aCAUCUGCa-GG-----UCGACUA-GGCCgCGG- -5'
29068 3' -56.4 NC_006146.1 + 40013 0.7 0.742672
Target:  5'- gUGUGGGCGUagcagggggCCuGCUGGgggccguagccgacUCCGGCGUg -3'
miRNA:   3'- -ACAUCUGCA---------GGuCGACU--------------AGGCCGCGg -5'
29068 3' -56.4 NC_006146.1 + 24364 0.7 0.735941
Target:  5'- aGUAGugGcgcagggCCAGCUccaGggCgCGGCGCCu -3'
miRNA:   3'- aCAUCugCa------GGUCGA---CuaG-GCCGCGG- -5'
29068 3' -56.4 NC_006146.1 + 156031 0.7 0.726251
Target:  5'- cUGUAGuuGUCCAGCUcc-CUGGCuGCCc -3'
miRNA:   3'- -ACAUCugCAGGUCGAcuaGGCCG-CGG- -5'
29068 3' -56.4 NC_006146.1 + 84521 0.7 0.706643
Target:  5'- --cGGACGUCguGCcGGUacaGGCGCCg -3'
miRNA:   3'- acaUCUGCAGguCGaCUAgg-CCGCGG- -5'
29068 3' -56.4 NC_006146.1 + 33279 0.7 0.706643
Target:  5'- gUGgggGGugGcCCGGCUGGgcaCCGcuGCGCCg -3'
miRNA:   3'- -ACa--UCugCaGGUCGACUa--GGC--CGCGG- -5'
29068 3' -56.4 NC_006146.1 + 33155 0.7 0.706643
Target:  5'- gUGgggGGugGcCCGGCUGGgcaCCGccGCGCCg -3'
miRNA:   3'- -ACa--UCugCaGGUCGACUa--GGC--CGCGG- -5'
29068 3' -56.4 NC_006146.1 + 102560 0.71 0.68679
Target:  5'- --gAGGCGUCCAGCagcaGGUCCGa-GCCg -3'
miRNA:   3'- acaUCUGCAGGUCGa---CUAGGCcgCGG- -5'
29068 3' -56.4 NC_006146.1 + 19569 0.71 0.686789
Target:  5'- gGUGGGCGaCCu-CUcGGUCCGGCGCg -3'
miRNA:   3'- aCAUCUGCaGGucGA-CUAGGCCGCGg -5'
29068 3' -56.4 NC_006146.1 + 97440 0.71 0.683794
Target:  5'- gGUGGAUGgaaccuccucuucuUCCAuGUUGucAUCCGGUGCCa -3'
miRNA:   3'- aCAUCUGC--------------AGGU-CGAC--UAGGCCGCGG- -5'
29068 3' -56.4 NC_006146.1 + 74619 0.72 0.606269
Target:  5'- --cAGcACGUgCAGcCUGAUgCGGCGCCc -3'
miRNA:   3'- acaUC-UGCAgGUC-GACUAgGCCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.