miRNA display CGI


Results 61 - 71 of 71 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29068 3' -56.4 NC_006146.1 + 43484 0.73 0.580172
Target:  5'- gGUGGACGUugccguacagauuucCCAGUagGGUCCGG-GCCa -3'
miRNA:   3'- aCAUCUGCA---------------GGUCGa-CUAGGCCgCGG- -5'
29068 3' -56.4 NC_006146.1 + 57896 0.73 0.540537
Target:  5'- gGUGGAacggcgccuUGUCCAggacaugcagagggcGCUGG-CCGGCGCCg -3'
miRNA:   3'- aCAUCU---------GCAGGU---------------CGACUaGGCCGCGG- -5'
29068 3' -56.4 NC_006146.1 + 60052 0.74 0.517191
Target:  5'- ----aGCGUCCcuCUGAUCgGGCGCCg -3'
miRNA:   3'- acaucUGCAGGucGACUAGgCCGCGG- -5'
29068 3' -56.4 NC_006146.1 + 167284 0.74 0.507582
Target:  5'- cGUggGGAUGgCCGGCggGAggggCCGGCGCCu -3'
miRNA:   3'- aCA--UCUGCaGGUCGa-CUa---GGCCGCGG- -5'
29068 3' -56.4 NC_006146.1 + 160153 0.74 0.507582
Target:  5'- aGUAGAUGUagccgcauggccCCGGCUGGcUCUGGCuGCCc -3'
miRNA:   3'- aCAUCUGCA------------GGUCGACU-AGGCCG-CGG- -5'
29068 3' -56.4 NC_006146.1 + 168216 0.74 0.507582
Target:  5'- cGUggGGAUGgCCGGCggGAggggCCGGCGCCu -3'
miRNA:   3'- aCA--UCUGCaGGUCGa-CUa---GGCCGCGG- -5'
29068 3' -56.4 NC_006146.1 + 169148 0.74 0.507582
Target:  5'- cGUggGGAUGgCCGGCggGAggggCCGGCGCCu -3'
miRNA:   3'- aCA--UCUGCaGGUCGa-CUa---GGCCGCGG- -5'
29068 3' -56.4 NC_006146.1 + 170080 0.75 0.460768
Target:  5'- cGUggGGAUGgCCGGCggGAggggCCGGCGCCg -3'
miRNA:   3'- aCA--UCUGCaGGUCGa-CUa---GGCCGCGG- -5'
29068 3' -56.4 NC_006146.1 + 33971 0.77 0.358756
Target:  5'- gGgcGugGUCCGcuggguccGCUGGUCCGGUGCa -3'
miRNA:   3'- aCauCugCAGGU--------CGACUAGGCCGCGg -5'
29068 3' -56.4 NC_006146.1 + 68108 0.79 0.273624
Target:  5'- gGUGGGCGgCCAGCcGGUCCgcggugagcGGCGCCa -3'
miRNA:   3'- aCAUCUGCaGGUCGaCUAGG---------CCGCGG- -5'
29068 3' -56.4 NC_006146.1 + 99878 1.12 0.00205
Target:  5'- aUGUAGACGUCCAGCUGAUCCGGCGCCu -3'
miRNA:   3'- -ACAUCUGCAGGUCGACUAGGCCGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.