miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29068 3' -56.4 NC_006146.1 + 2430 0.66 0.918152
Target:  5'- cGUGGACGUgaGGCcgGAUCUGcGCaCCg -3'
miRNA:   3'- aCAUCUGCAggUCGa-CUAGGC-CGcGG- -5'
29068 3' -56.4 NC_006146.1 + 13536 0.66 0.912415
Target:  5'- cGUGGACaGgaaCCuGCUGcaggcgCCGGgCGCCg -3'
miRNA:   3'- aCAUCUG-Ca--GGuCGACua----GGCC-GCGG- -5'
29068 3' -56.4 NC_006146.1 + 19569 0.71 0.686789
Target:  5'- gGUGGGCGaCCu-CUcGGUCCGGCGCg -3'
miRNA:   3'- aCAUCUGCaGGucGA-CUAGGCCGCGg -5'
29068 3' -56.4 NC_006146.1 + 20328 0.67 0.893831
Target:  5'- gUGcUGGACGauggCCAGCaGAUCCGcGUGUUc -3'
miRNA:   3'- -AC-AUCUGCa---GGUCGaCUAGGC-CGCGG- -5'
29068 3' -56.4 NC_006146.1 + 23733 0.66 0.918151
Target:  5'- --gGGGCG-CCGGuCUGcgCCGcCGCCg -3'
miRNA:   3'- acaUCUGCaGGUC-GACuaGGCcGCGG- -5'
29068 3' -56.4 NC_006146.1 + 24364 0.7 0.735941
Target:  5'- aGUAGugGcgcagggCCAGCUccaGggCgCGGCGCCu -3'
miRNA:   3'- aCAUCugCa------GGUCGA---CuaG-GCCGCGG- -5'
29068 3' -56.4 NC_006146.1 + 26776 0.66 0.906448
Target:  5'- ---cGACGUCCcaGGUUG---CGGCGCCa -3'
miRNA:   3'- acauCUGCAGG--UCGACuagGCCGCGG- -5'
29068 3' -56.4 NC_006146.1 + 33155 0.7 0.706643
Target:  5'- gUGgggGGugGcCCGGCUGGgcaCCGccGCGCCg -3'
miRNA:   3'- -ACa--UCugCaGGUCGACUa--GGC--CGCGG- -5'
29068 3' -56.4 NC_006146.1 + 33237 0.67 0.880324
Target:  5'- gGUGGcCG-CCGGCgGGUCCGccGgGCCg -3'
miRNA:   3'- aCAUCuGCaGGUCGaCUAGGC--CgCGG- -5'
29068 3' -56.4 NC_006146.1 + 33279 0.7 0.706643
Target:  5'- gUGgggGGugGcCCGGCUGGgcaCCGcuGCGCCg -3'
miRNA:   3'- -ACa--UCugCaGGUCGACUa--GGC--CGCGG- -5'
29068 3' -56.4 NC_006146.1 + 33607 0.68 0.83482
Target:  5'- gGgcGugGUCC-GCgGGUUCGGUGCa -3'
miRNA:   3'- aCauCugCAGGuCGaCUAGGCCGCGg -5'
29068 3' -56.4 NC_006146.1 + 33971 0.77 0.358756
Target:  5'- gGgcGugGUCCGcuggguccGCUGGUCCGGUGCa -3'
miRNA:   3'- aCauCugCAGGU--------CGACUAGGCCGCGg -5'
29068 3' -56.4 NC_006146.1 + 40013 0.7 0.742672
Target:  5'- gUGUGGGCGUagcagggggCCuGCUGGgggccguagccgacUCCGGCGUg -3'
miRNA:   3'- -ACAUCUGCA---------GGuCGACU--------------AGGCCGCGg -5'
29068 3' -56.4 NC_006146.1 + 40861 0.66 0.912415
Target:  5'- -uUGGAgGcCCGGCUcgcGGUCCGGagacggaGCCg -3'
miRNA:   3'- acAUCUgCaGGUCGA---CUAGGCCg------CGG- -5'
29068 3' -56.4 NC_006146.1 + 40973 0.68 0.84289
Target:  5'- cGUAGAcCG-CCGugguGCcGcgCCGGCGCCc -3'
miRNA:   3'- aCAUCU-GCaGGU----CGaCuaGGCCGCGG- -5'
29068 3' -56.4 NC_006146.1 + 41414 0.68 0.82657
Target:  5'- cGUAGACGgCCGcGCUGggUgGGCGgCu -3'
miRNA:   3'- aCAUCUGCaGGU-CGACuaGgCCGCgG- -5'
29068 3' -56.4 NC_006146.1 + 42695 0.67 0.893831
Target:  5'- --aAGAgCGUCUGGC----CCGGCGCCg -3'
miRNA:   3'- acaUCU-GCAGGUCGacuaGGCCGCGG- -5'
29068 3' -56.4 NC_006146.1 + 43276 0.66 0.923656
Target:  5'- --aGGGCGgCCuGgaGGUCCGGCagguGCCu -3'
miRNA:   3'- acaUCUGCaGGuCgaCUAGGCCG----CGG- -5'
29068 3' -56.4 NC_006146.1 + 43484 0.73 0.580172
Target:  5'- gGUGGACGUugccguacagauuucCCAGUagGGUCCGG-GCCa -3'
miRNA:   3'- aCAUCUGCA---------------GGUCGa-CUAGGCCgCGG- -5'
29068 3' -56.4 NC_006146.1 + 47325 0.68 0.842891
Target:  5'- -cUGGAUGauggccUCCAGCcGggCCaGGCGCCg -3'
miRNA:   3'- acAUCUGC------AGGUCGaCuaGG-CCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.